Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   SANR_RS01335 Genome accession   NC_022239
Coordinates   248437..248832 (+) Length   131 a.a.
NCBI ID   WP_003035348.1    Uniprot ID   I0SGR1
Organism   Streptococcus anginosus C238     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 243437..253832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SANR_RS01305 (SANR_0252) - 243823..245124 (+) 1302 WP_003035306.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  SANR_RS01310 (SANR_0253) - 245306..245866 (+) 561 WP_003035299.1 folate family ECF transporter S component -
  SANR_RS01315 (SANR_0254) pepA 245929..246993 (-) 1065 WP_020999455.1 glutamyl aminopeptidase -
  SANR_RS01320 (SANR_0255) - 247113..247400 (+) 288 WP_003035369.1 DUF4651 domain-containing protein -
  SANR_RS01325 (SANR_0256) - 247397..247714 (+) 318 WP_003035304.1 thioredoxin family protein -
  SANR_RS01330 (SANR_0257) ytpR 247731..248357 (+) 627 WP_003026939.1 YtpR family tRNA-binding protein -
  SANR_RS01335 (SANR_0258) ssbB/cilA 248437..248832 (+) 396 WP_003035348.1 single-stranded DNA-binding protein Machinery gene
  SANR_RS01340 (SANR_0259) - 249044..250029 (+) 986 Protein_231 sugar ABC transporter substrate-binding protein -
  SANR_RS01345 (SANR_0260) - 250029..251342 (+) 1314 WP_003035292.1 sensor histidine kinase -
  SANR_RS01350 (SANR_0261) - 251335..252018 (+) 684 WP_003035377.1 response regulator transcription factor -
  SANR_RS01355 (SANR_0262) - 252015..253301 (+) 1287 WP_041791061.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14657.56 Da        Isoelectric Point: 5.9381

>NTDB_id=61648 SANR_RS01335 WP_003035348.1 248437..248832(+) (ssbB/cilA) [Streptococcus anginosus C238]
MYNKVILIGRLVNTPELNKTANDKSVARATLAVNRRYKGQNGEREADFVNVVVWGKLAETLASYASKGSLISLDGELRTR
RYEKDGVTHYVTEVLCNGFQLLESRAQRALRENNAGADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=61648 SANR_RS01335 WP_003035348.1 248437..248832(+) (ssbB/cilA) [Streptococcus anginosus C238]
ATGTATAATAAAGTAATTTTAATCGGTCGCTTGGTGAATACACCAGAATTAAACAAAACAGCTAATGATAAATCTGTGGC
GCGTGCAACACTTGCTGTCAATCGTCGCTACAAAGGACAAAATGGTGAACGAGAAGCAGACTTCGTCAATGTCGTTGTTT
GGGGCAAGTTAGCTGAAACCTTAGCAAGCTATGCAAGTAAAGGCAGCTTAATTTCGCTAGATGGTGAACTTCGCACTCGC
CGCTATGAAAAGGACGGAGTGACGCATTATGTCACAGAAGTACTTTGCAATGGCTTTCAGCTATTAGAAAGCCGTGCACA
GCGAGCTCTTCGTGAGAATAATGCTGGTGCAGATTTGGCAGACTTGGTTCTGGAAGAAGAGGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0SGR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

84.733

100

0.847
  ssbB/cilA Streptococcus mitis NCTC 12261

83.969

100

0.84
  ssbB/cilA Streptococcus pneumoniae Rx1

83.969

100

0.84
  ssbB/cilA Streptococcus pneumoniae D39

83.969

100

0.84
  ssbB/cilA Streptococcus pneumoniae R6

83.969

100

0.84
  ssbB/cilA Streptococcus mitis SK321

83.969

100

0.84
  ssbA Streptococcus mutans UA159

80.916

100

0.809
  ssbB Streptococcus sobrinus strain NIDR 6715-7

76.336

100

0.763
  ssbB Lactococcus lactis subsp. cremoris KW2

61.607

85.496

0.527
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

44.068

90.076

0.397
  ssbB Bacillus subtilis subsp. subtilis str. 168

45.37

82.443

0.374

Multiple sequence alignment