Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   SANR_RS01180 Genome accession   NC_022239
Coordinates   216667..217095 (+) Length   142 a.a.
NCBI ID   WP_020999411.1    Uniprot ID   -
Organism   Streptococcus anginosus C238     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 211667..222095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SANR_RS01150 (SANR_0221) - 212120..212479 (+) 360 WP_003028467.1 MerR family transcriptional regulator -
  SANR_RS01155 (SANR_0222) glnA 212518..213864 (+) 1347 WP_003033463.1 type I glutamate--ammonia ligase -
  SANR_RS01160 (SANR_0223) - 214053..214418 (+) 366 WP_020999445.1 DUF1033 family protein -
  SANR_RS01165 (SANR_0224) comYA 214488..215429 (+) 942 WP_003033431.1 competence type IV pilus ATPase ComGA Machinery gene
  SANR_RS01170 (SANR_0225) comYB 215371..216393 (+) 1023 WP_020999446.1 competence type IV pilus assembly protein ComGB Machinery gene
  SANR_RS01175 (SANR_0226) comYC 216390..216707 (+) 318 WP_020998068.1 competence type IV pilus major pilin ComGC Machinery gene
  SANR_RS01180 (SANR_0227) comYD 216667..217095 (+) 429 WP_020999411.1 competence type IV pilus minor pilin ComGD Machinery gene
  SANR_RS01185 comGE/cglE 217067..217360 (+) 294 WP_003035318.1 competence type IV pilus minor pilin ComGE Machinery gene
  SANR_RS01190 (SANR_0228) comGF/cglF 217344..217781 (+) 438 WP_003035329.1 competence type IV pilus minor pilin ComGF Machinery gene
  SANR_RS01195 (SANR_0229) comGG 217762..218088 (+) 327 WP_020999447.1 competence type IV pilus minor pilin ComGG -
  SANR_RS01200 (SANR_0230) comYH 218173..219126 (+) 954 WP_003035359.1 class I SAM-dependent methyltransferase Machinery gene
  SANR_RS01205 (SANR_0231) - 219173..220372 (+) 1200 WP_003035323.1 acetate kinase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16224.69 Da        Isoelectric Point: 10.1968

>NTDB_id=61642 SANR_RS01180 WP_020999411.1 216667..217095(+) (comYD) [Streptococcus anginosus C238]
MQNIQKKLAQLQIKGFTLLESLLTLFMTSLLLLAVSGSVRSSFEQVEQQIFFLEFEHFYRESQKLSSAAQSQLDMNFSRE
RISNGYSYLAVPRSIQAPEDLTLHFDKAGGNSSLGKVIFQTKKQTITYQLYLGNGKFKKTIR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=61642 SANR_RS01180 WP_020999411.1 216667..217095(+) (comYD) [Streptococcus anginosus C238]
ATGCAAAACATACAAAAGAAGCTCGCACAGTTGCAGATTAAAGGTTTTACGCTTTTGGAAAGTTTGCTGACCTTATTTAT
GACGAGTCTCTTATTGCTTGCTGTGTCAGGTTCAGTACGTTCATCGTTTGAGCAAGTAGAACAGCAAATTTTCTTTCTAG
AGTTTGAGCATTTTTATCGGGAAAGTCAGAAGTTGAGTAGTGCAGCTCAAAGTCAGTTGGACATGAATTTTTCTCGCGAG
AGGATTTCCAATGGTTACAGCTATTTGGCAGTTCCTCGCTCGATTCAGGCTCCGGAAGACCTGACACTTCATTTTGACAA
GGCAGGCGGCAATTCATCGCTCGGAAAGGTTATCTTTCAGACAAAAAAGCAAACAATTACGTATCAATTATATCTAGGAA
ATGGAAAATTTAAGAAAACAATACGTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus gordonii str. Challis substr. CH1

61.94

94.366

0.585
  comGD/cglD Streptococcus mitis NCTC 12261

58.915

90.845

0.535
  comGD/cglD Streptococcus mitis SK321

58.268

89.437

0.521
  comGD/cglD Streptococcus pneumoniae Rx1

58.268

89.437

0.521
  comGD/cglD Streptococcus pneumoniae D39

58.268

89.437

0.521
  comGD/cglD Streptococcus pneumoniae R6

58.268

89.437

0.521
  comGD/cglD Streptococcus pneumoniae TIGR4

57.48

89.437

0.514
  comYD Streptococcus mutans UA140

50

91.549

0.458
  comYD Streptococcus mutans UA159

50

91.549

0.458

Multiple sequence alignment