Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | SANR_RS01200 | Genome accession | NC_022239 |
| Coordinates | 218173..219126 (+) | Length | 317 a.a. |
| NCBI ID | WP_003035359.1 | Uniprot ID | I0SGR4 |
| Organism | Streptococcus anginosus C238 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 213173..224126
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SANR_RS01160 (SANR_0223) | - | 214053..214418 (+) | 366 | WP_020999445.1 | DUF1033 family protein | - |
| SANR_RS01165 (SANR_0224) | comYA | 214488..215429 (+) | 942 | WP_003033431.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SANR_RS01170 (SANR_0225) | comYB | 215371..216393 (+) | 1023 | WP_020999446.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SANR_RS01175 (SANR_0226) | comYC | 216390..216707 (+) | 318 | WP_020998068.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SANR_RS01180 (SANR_0227) | comYD | 216667..217095 (+) | 429 | WP_020999411.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| SANR_RS01185 | comGE/cglE | 217067..217360 (+) | 294 | WP_003035318.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| SANR_RS01190 (SANR_0228) | comGF/cglF | 217344..217781 (+) | 438 | WP_003035329.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| SANR_RS01195 (SANR_0229) | comGG | 217762..218088 (+) | 327 | WP_020999447.1 | competence type IV pilus minor pilin ComGG | - |
| SANR_RS01200 (SANR_0230) | comYH | 218173..219126 (+) | 954 | WP_003035359.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SANR_RS01205 (SANR_0231) | - | 219173..220372 (+) | 1200 | WP_003035323.1 | acetate kinase | - |
| SANR_RS01210 (SANR_0232) | glmS | 220762..222576 (+) | 1815 | WP_020999448.1 | glutamine--fructose-6-phosphate transaminase (isomerizing) | - |
| SANR_RS01215 (SANR_0234) | - | 222957..223892 (-) | 936 | WP_020999450.1 | IS30 family transposase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 36018.86 Da Isoelectric Point: 4.3141
>NTDB_id=61645 SANR_RS01200 WP_003035359.1 218173..219126(+) (comYH) [Streptococcus anginosus C238]
MNFEKIEQAYSLLLENVQELQNTLLTNFYDALVEQNGVYLDGNTELAIVKKNNETLKSLKLDKEEWRRAYQFLLMKAAQT
EPLQANHQFTPDSIGFILTFLIDQLSKKEHIDILEIGSGMGNLAETILNNTQKNVDYLGLELDDLLIDISASIADVMDAK
VSFVQGDAVRPQVLKESDVIISDLPVGFYPDDNIATRYEVASRQEHTYAHHLLMEQSLKYLKSGGYAIFLAPNDLLTSSQ
SDLLKTWLQKHAQIVAMIALPEALFGNAAYAKTIFVLQKQEEQAVQLFVYALSDLRDQDDLLEFSEKFQNWSRESEI
MNFEKIEQAYSLLLENVQELQNTLLTNFYDALVEQNGVYLDGNTELAIVKKNNETLKSLKLDKEEWRRAYQFLLMKAAQT
EPLQANHQFTPDSIGFILTFLIDQLSKKEHIDILEIGSGMGNLAETILNNTQKNVDYLGLELDDLLIDISASIADVMDAK
VSFVQGDAVRPQVLKESDVIISDLPVGFYPDDNIATRYEVASRQEHTYAHHLLMEQSLKYLKSGGYAIFLAPNDLLTSSQ
SDLLKTWLQKHAQIVAMIALPEALFGNAAYAKTIFVLQKQEEQAVQLFVYALSDLRDQDDLLEFSEKFQNWSRESEI
Nucleotide
Download Length: 954 bp
>NTDB_id=61645 SANR_RS01200 WP_003035359.1 218173..219126(+) (comYH) [Streptococcus anginosus C238]
ATGAATTTTGAAAAAATAGAACAGGCTTATTCGCTTTTGTTAGAAAATGTCCAGGAGCTCCAAAATACTCTTTTGACGAA
TTTTTATGATGCTTTGGTCGAGCAAAATGGGGTTTATCTGGATGGAAATACAGAGCTAGCTATTGTCAAAAAAAATAATG
AAACACTTAAATCTTTGAAATTAGATAAAGAAGAATGGCGCCGAGCCTACCAATTTTTGCTGATGAAAGCAGCTCAAACA
GAGCCTTTGCAAGCCAATCATCAATTTACTCCAGATTCTATCGGGTTTATCTTAACTTTTCTCATTGACCAATTGAGTAA
AAAAGAACACATTGATATTTTGGAAATTGGTAGCGGAATGGGGAATTTAGCTGAGACGATTCTCAATAATACACAAAAAA
ATGTGGATTATCTAGGACTGGAATTGGACGATCTGCTAATTGATATATCAGCCAGTATCGCAGATGTGATGGATGCAAAA
GTTAGTTTTGTGCAAGGTGATGCAGTGCGTCCGCAAGTATTGAAAGAAAGCGATGTGATTATCAGTGATTTACCAGTTGG
CTTTTATCCTGATGATAACATTGCGACGCGCTATGAAGTGGCTAGTAGACAGGAGCATACTTATGCTCATCATTTGTTAA
TGGAACAATCGCTCAAGTATCTCAAATCAGGCGGTTATGCTATTTTCCTTGCACCAAATGATTTATTGACTAGTTCGCAA
AGTGATTTGCTGAAAACTTGGCTGCAAAAGCATGCCCAGATAGTTGCGATGATTGCATTGCCAGAAGCACTTTTTGGAAA
TGCCGCTTATGCCAAGACAATTTTTGTGCTGCAAAAGCAAGAAGAACAAGCTGTTCAACTGTTTGTTTATGCTTTGTCTG
ATTTGCGAGATCAGGACGATTTATTGGAATTTAGCGAAAAGTTTCAAAATTGGAGCAGAGAAAGTGAAATTTAA
ATGAATTTTGAAAAAATAGAACAGGCTTATTCGCTTTTGTTAGAAAATGTCCAGGAGCTCCAAAATACTCTTTTGACGAA
TTTTTATGATGCTTTGGTCGAGCAAAATGGGGTTTATCTGGATGGAAATACAGAGCTAGCTATTGTCAAAAAAAATAATG
AAACACTTAAATCTTTGAAATTAGATAAAGAAGAATGGCGCCGAGCCTACCAATTTTTGCTGATGAAAGCAGCTCAAACA
GAGCCTTTGCAAGCCAATCATCAATTTACTCCAGATTCTATCGGGTTTATCTTAACTTTTCTCATTGACCAATTGAGTAA
AAAAGAACACATTGATATTTTGGAAATTGGTAGCGGAATGGGGAATTTAGCTGAGACGATTCTCAATAATACACAAAAAA
ATGTGGATTATCTAGGACTGGAATTGGACGATCTGCTAATTGATATATCAGCCAGTATCGCAGATGTGATGGATGCAAAA
GTTAGTTTTGTGCAAGGTGATGCAGTGCGTCCGCAAGTATTGAAAGAAAGCGATGTGATTATCAGTGATTTACCAGTTGG
CTTTTATCCTGATGATAACATTGCGACGCGCTATGAAGTGGCTAGTAGACAGGAGCATACTTATGCTCATCATTTGTTAA
TGGAACAATCGCTCAAGTATCTCAAATCAGGCGGTTATGCTATTTTCCTTGCACCAAATGATTTATTGACTAGTTCGCAA
AGTGATTTGCTGAAAACTTGGCTGCAAAAGCATGCCCAGATAGTTGCGATGATTGCATTGCCAGAAGCACTTTTTGGAAA
TGCCGCTTATGCCAAGACAATTTTTGTGCTGCAAAAGCAAGAAGAACAAGCTGTTCAACTGTTTGTTTATGCTTTGTCTG
ATTTGCGAGATCAGGACGATTTATTGGAATTTAGCGAAAAGTTTCAAAATTGGAGCAGAGAAAGTGAAATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
60.952 |
99.369 |
0.606 |
| comYH | Streptococcus mutans UA159 |
60.635 |
99.369 |
0.603 |