Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   SANR_RS01170 Genome accession   NC_022239
Coordinates   215371..216393 (+) Length   340 a.a.
NCBI ID   WP_020999446.1    Uniprot ID   -
Organism   Streptococcus anginosus C238     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 210371..221393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SANR_RS01145 (SANR_0220) - 211513..212043 (+) 531 WP_003033434.1 FUSC family protein -
  SANR_RS01150 (SANR_0221) - 212120..212479 (+) 360 WP_003028467.1 MerR family transcriptional regulator -
  SANR_RS01155 (SANR_0222) glnA 212518..213864 (+) 1347 WP_003033463.1 type I glutamate--ammonia ligase -
  SANR_RS01160 (SANR_0223) - 214053..214418 (+) 366 WP_020999445.1 DUF1033 family protein -
  SANR_RS01165 (SANR_0224) comYA 214488..215429 (+) 942 WP_003033431.1 competence type IV pilus ATPase ComGA Machinery gene
  SANR_RS01170 (SANR_0225) comYB 215371..216393 (+) 1023 WP_020999446.1 competence type IV pilus assembly protein ComGB Machinery gene
  SANR_RS01175 (SANR_0226) comYC 216390..216707 (+) 318 WP_020998068.1 competence type IV pilus major pilin ComGC Machinery gene
  SANR_RS01180 (SANR_0227) comYD 216667..217095 (+) 429 WP_020999411.1 competence type IV pilus minor pilin ComGD Machinery gene
  SANR_RS01185 comGE/cglE 217067..217360 (+) 294 WP_003035318.1 competence type IV pilus minor pilin ComGE Machinery gene
  SANR_RS01190 (SANR_0228) comGF/cglF 217344..217781 (+) 438 WP_003035329.1 competence type IV pilus minor pilin ComGF Machinery gene
  SANR_RS01195 (SANR_0229) comGG 217762..218088 (+) 327 WP_020999447.1 competence type IV pilus minor pilin ComGG -
  SANR_RS01200 (SANR_0230) comYH 218173..219126 (+) 954 WP_003035359.1 class I SAM-dependent methyltransferase Machinery gene
  SANR_RS01205 (SANR_0231) - 219173..220372 (+) 1200 WP_003035323.1 acetate kinase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 39275.37 Da        Isoelectric Point: 9.5497

>NTDB_id=61640 SANR_RS01170 WP_020999446.1 215371..216393(+) (comYB) [Streptococcus anginosus C238]
MQQDISILNKQNRKKLSTVKQKKVVELLNNLFSSGFHLAEMIDFLKRSALLEEVYVDRMKEGLSTGKPFSDIMASLGFSD
NVVTQLSLAELHGNLSLSLSKIEEYLENISKVKKKLIEVATYPFILFIFLVFIMLGLRNYLLPQLESQNIATQLISRLPQ
IFLGSVGVVFALFAIGFYWFRKRSQIRVFSLLSRLPFWGTFIQTYLTAYYAREWGNMIGQGLELSQIFQMMQGQRSAMFQ
EIGKDLEVALQNGQEFSQVVKHYPFFKKELGLMIEYGEVKSKLGCELEVYAQKTWEVFFKRVHQAMNIIQPLVFVFVALM
IVLLYAAMLLPIYQNMEVQL

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=61640 SANR_RS01170 WP_020999446.1 215371..216393(+) (comYB) [Streptococcus anginosus C238]
ATGCAGCAGGACATATCAATCTTGAACAAGCAGAATCGGAAAAAATTATCCACGGTTAAGCAGAAAAAGGTCGTAGAGTT
GCTGAATAATCTTTTTTCTAGCGGCTTTCATTTAGCAGAAATGATCGACTTTTTGAAGCGAAGTGCCTTGTTAGAAGAAG
TCTATGTGGACAGGATGAAAGAGGGTTTGTCAACAGGAAAGCCTTTTTCGGACATTATGGCAAGCTTAGGTTTTTCGGAT
AATGTAGTAACACAGCTTTCATTAGCGGAATTGCATGGAAATTTATCGCTCAGTTTGAGTAAAATTGAAGAGTATTTGGA
AAATATCTCAAAAGTCAAGAAAAAGTTAATTGAAGTGGCGACTTATCCATTTATTTTATTCATTTTTCTAGTGTTTATTA
TGTTAGGACTGCGCAATTATTTGTTACCGCAGTTGGAGAGTCAGAATATTGCAACACAACTGATTAGTCGTTTACCACAA
ATTTTTCTGGGTTCAGTAGGAGTTGTTTTTGCTTTGTTTGCGATAGGTTTTTATTGGTTTAGAAAAAGATCACAAATAAG
AGTATTTAGTTTGTTGTCTCGACTTCCTTTTTGGGGCACTTTTATTCAAACCTATTTGACAGCTTATTATGCGAGAGAAT
GGGGAAATATGATTGGTCAAGGCTTAGAACTCAGTCAGATTTTCCAGATGATGCAAGGACAGCGCTCTGCTATGTTTCAA
GAGATTGGAAAAGATTTAGAAGTAGCACTGCAAAATGGTCAGGAATTTTCACAAGTAGTTAAGCATTATCCATTTTTTAA
AAAAGAATTGGGGTTGATGATTGAATATGGGGAAGTGAAATCCAAATTGGGGTGCGAATTAGAAGTTTATGCTCAAAAAA
CGTGGGAGGTGTTTTTTAAACGTGTTCATCAAGCGATGAATATCATTCAGCCATTAGTATTTGTCTTTGTGGCGTTGATG
ATTGTATTGTTGTATGCGGCCATGTTGCTGCCAATTTATCAAAATATGGAGGTTCAATTATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(211-331)

Type II secretion system (T2SS), protein F (T2SSF)

(26-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

72.647

100

0.726
  comGB/cglB Streptococcus mitis NCTC 12261

68.358

98.529

0.674
  comGB/cglB Streptococcus mitis SK321

68.06

98.529

0.671
  comGB/cglB Streptococcus pneumoniae TIGR4

67.463

98.529

0.665
  comGB/cglB Streptococcus pneumoniae R6

67.463

98.529

0.665
  comGB/cglB Streptococcus pneumoniae Rx1

67.463

98.529

0.665
  comGB/cglB Streptococcus pneumoniae D39

67.463

98.529

0.665
  comYB Streptococcus mutans UA140

60.526

100

0.609
  comYB Streptococcus mutans UA159

60.526

100

0.609
  comGB Lactococcus lactis subsp. cremoris KW2

51.335

99.118

0.509

Multiple sequence alignment