Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   SCI_RS08680 Genome accession   NC_022238
Coordinates   1756909..1757304 (-) Length   131 a.a.
NCBI ID   WP_006268537.1    Uniprot ID   F9P7X1
Organism   Streptococcus constellatus subsp. pharyngis C1050     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1751909..1762304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCI_RS08660 (SCI_1696) - 1752354..1753640 (-) 1287 WP_037592754.1 ABC transporter substrate-binding protein -
  SCI_RS08665 (SCI_1697) - 1753637..1754320 (-) 684 WP_006268563.1 response regulator transcription factor -
  SCI_RS08670 (SCI_1698) - 1754313..1755626 (-) 1314 WP_020998054.1 sensor histidine kinase -
  SCI_RS08675 (SCI_1699) - 1755626..1756612 (-) 987 WP_020998055.1 sugar ABC transporter substrate-binding protein -
  SCI_RS08680 (SCI_1700) ssbB/cilA 1756909..1757304 (-) 396 WP_006268537.1 single-stranded DNA-binding protein Machinery gene
  SCI_RS08685 (SCI_1701) ytpR 1757376..1758002 (-) 627 WP_003070743.1 YtpR family tRNA-binding protein -
  SCI_RS08690 (SCI_1702) - 1758019..1758336 (-) 318 WP_006268266.1 thioredoxin family protein -
  SCI_RS08695 (SCI_1703) - 1758333..1758620 (-) 288 WP_006268206.1 DUF4651 domain-containing protein -
  SCI_RS08700 (SCI_1704) pepA 1758740..1759804 (+) 1065 WP_020998056.1 glutamyl aminopeptidase -
  SCI_RS08705 (SCI_1705) - 1759926..1760486 (-) 561 WP_006268441.1 folate family ECF transporter S component -
  SCI_RS08710 (SCI_1706) - 1760666..1761973 (-) 1308 WP_037592827.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14713.67 Da        Isoelectric Point: 5.9381

>NTDB_id=61617 SCI_RS08680 WP_006268537.1 1756909..1757304(-) (ssbB/cilA) [Streptococcus constellatus subsp. pharyngis C1050]
MYNKVILIGRLVNTPELNKTANDKSVARATLAVNRRYKGQNGEREADFVNVVVWGKLAETLASYATKGSLISLDGELRTR
RYEKDGVTHYVTEVLCNGFQLLESRAQRALRENNVGADLADLLLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=61617 SCI_RS08680 WP_006268537.1 1756909..1757304(-) (ssbB/cilA) [Streptococcus constellatus subsp. pharyngis C1050]
ATGTATAATAAAGTAATTTTAATTGGTCGCTTGGTGAATACACCAGAATTAAACAAAACAGCTAATGATAAATCTGTGGC
GCGTGCAACACTTGCTGTCAATCGTCGCTACAAAGGACAAAATGGTGAACGAGAAGCAGACTTCGTCAATGTCGTTGTTT
GGGGCAAGTTAGCTGAAACCTTAGCAAGTTATGCGACTAAAGGCAGCTTAATTTCGCTAGATGGTGAACTTCGCACTCGC
CGCTATGAAAAGGACGGAGTGACGCATTATGTCACAGAAGTACTTTGCAATGGCTTTCAGCTATTAGAAAGCCGTGCACA
GCGAGCTCTTCGTGAGAATAATGTTGGTGCAGATTTGGCAGACTTGCTTCTGGAAGAAGAGGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9P7X1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

83.969

100

0.84
  ssbB/cilA Streptococcus mitis NCTC 12261

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae Rx1

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae D39

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae R6

83.206

100

0.832
  ssbB/cilA Streptococcus mitis SK321

83.206

100

0.832
  ssbA Streptococcus mutans UA159

79.389

100

0.794
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

61.404

87.023

0.534
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

46.018

86.26

0.397
  ssbB Bacillus subtilis subsp. subtilis str. 168

45.37

82.443

0.374

Multiple sequence alignment