Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LG291_RS23785 Genome accession   NZ_CP084990
Coordinates   4749937..4750305 (-) Length   122 a.a.
NCBI ID   WP_404356592.1    Uniprot ID   -
Organism   Cytobacillus firmus strain WLG-456     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4744937..4755305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG291_RS23765 (LG291_23570) - 4745577..4748396 (+) 2820 WP_404356586.1 DEAD/DEAH box helicase -
  LG291_RS23770 (LG291_23575) - 4748404..4748790 (-) 387 WP_404356588.1 hypothetical protein -
  LG291_RS23775 (LG291_23580) - 4748998..4749396 (+) 399 WP_404356590.1 helix-turn-helix domain-containing protein -
  LG291_RS23780 (LG291_23585) - 4749740..4749931 (-) 192 WP_404359564.1 hypothetical protein -
  LG291_RS23785 (LG291_23590) ssbB 4749937..4750305 (-) 369 WP_404356592.1 single-stranded DNA-binding protein Machinery gene
  LG291_RS23790 (LG291_23595) - 4750571..4751029 (+) 459 WP_394581229.1 YwpF-like family protein -
  LG291_RS23795 (LG291_23600) - 4751054..4751230 (-) 177 WP_404356594.1 hypothetical protein -
  LG291_RS23800 (LG291_23605) - 4751230..4751631 (-) 402 WP_404356596.1 hypothetical protein -
  LG291_RS23805 (LG291_23610) - 4751782..4752093 (-) 312 WP_076257178.1 hypothetical protein -
  LG291_RS23810 (LG291_23615) fabZ 4752228..4752656 (-) 429 WP_035327807.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LG291_RS23815 (LG291_23620) - 4752781..4753050 (-) 270 WP_159346421.1 DNA-directed RNA polymerase subunit beta -
  LG291_RS23820 (LG291_23625) - 4753069..4753896 (-) 828 WP_404356598.1 flagellar hook-basal body protein -
  LG291_RS23825 (LG291_23630) - 4753931..4754770 (-) 840 WP_404356600.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 14116.15 Da        Isoelectric Point: 9.8201

>NTDB_id=614235 LG291_RS23785 WP_404356592.1 4749937..4750305(-) (ssbB) [Cytobacillus firmus strain WLG-456]
MINQVTLVGRLTKDPELKRTQEGIPVTNVTLAVNRQYRNQKGEVDADFVQCTLWKKTAENTSQFCRKGTLIGVTGRIQTR
HYDNQEKKRIYVTEVVAESVRFLERKKTEDITVTVTKEELPF

Nucleotide


Download         Length: 369 bp        

>NTDB_id=614235 LG291_RS23785 WP_404356592.1 4749937..4750305(-) (ssbB) [Cytobacillus firmus strain WLG-456]
ATGATCAATCAAGTGACCCTGGTCGGAAGGCTGACAAAGGATCCTGAGCTCAAAAGGACACAGGAGGGAATTCCGGTAAC
AAATGTGACACTGGCAGTTAACCGCCAGTACCGCAACCAGAAGGGTGAAGTCGATGCAGATTTTGTGCAGTGCACCTTAT
GGAAGAAAACGGCTGAGAATACATCTCAGTTTTGCCGGAAGGGAACCCTGATTGGAGTAACCGGGCGGATCCAGACAAGG
CATTATGATAATCAGGAAAAGAAGCGCATTTATGTAACAGAGGTGGTAGCGGAATCCGTCCGCTTTCTTGAAAGGAAGAA
GACAGAGGACATTACTGTGACAGTAACCAAGGAGGAGCTTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.55

89.344

0.541
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.944

87.705

0.508
  ssb Latilactobacillus sakei subsp. sakei 23K

50.926

88.525

0.451
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40.909

100

0.443
  ssbB/cilA Streptococcus pneumoniae TIGR4

38.636

100

0.418
  ssbB/cilA Streptococcus mitis NCTC 12261

38.636

100

0.418
  ssbB/cilA Streptococcus pneumoniae Rx1

37.879

100

0.41
  ssbB/cilA Streptococcus pneumoniae D39

37.879

100

0.41
  ssbB/cilA Streptococcus pneumoniae R6

37.879

100

0.41
  ssbB/cilA Streptococcus mitis SK321

37.879

100

0.41
  ssbA Streptococcus mutans UA159

37.879

100

0.41
  ssbB Lactococcus lactis subsp. cremoris KW2

42.056

87.705

0.369