Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   N175_RS00780 Genome accession   NC_022223
Coordinates   161939..163048 (-) Length   369 a.a.
NCBI ID   WP_017048702.1    Uniprot ID   -
Organism   Vibrio anguillarum M3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 156939..168048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N175_RS00750 (N175_00785) hemF 157465..158379 (-) 915 WP_010319908.1 oxygen-dependent coproporphyrinogen oxidase -
  N175_RS00755 (N175_00790) - 158400..158957 (-) 558 WP_013855525.1 L-threonylcarbamoyladenylate synthase -
  N175_RS00760 (N175_00795) purE 159158..159643 (+) 486 WP_010319910.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  N175_RS00765 (N175_00800) - 159648..160787 (+) 1140 WP_013855527.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  N175_RS00770 (N175_00805) - 160860..161432 (-) 573 WP_029189869.1 type I DNA topoisomerase -
  N175_RS00775 (N175_00810) - 161460..161936 (-) 477 WP_013855530.1 DUF494 family protein -
  N175_RS00780 (N175_00815) dprA 161939..163048 (-) 1110 WP_017048702.1 DNA-processing protein DprA Machinery gene
  N175_RS00785 (N175_00820) - 163048..164178 (-) 1131 WP_013855533.1 LysM peptidoglycan-binding domain-containing protein -
  N175_RS00790 (N175_00825) def 164319..164828 (+) 510 WP_038148727.1 peptide deformylase -
  N175_RS00795 (N175_00830) fmt 164845..165792 (+) 948 WP_013855535.1 methionyl-tRNA formyltransferase -
  N175_RS00800 (N175_00835) rsmB 165852..167132 (+) 1281 WP_013855536.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39849.61 Da        Isoelectric Point: 6.7182

>NTDB_id=61350 N175_RS00780 WP_017048702.1 161939..163048(-) (dprA) [Vibrio anguillarum M3]
MEQNELAAWLAFSFVPKLGGKKLSRLASVASLAHLIDYSERELAALGLVQDQIRYLRETAPQEVEECLSWQQANESHHIL
TPFCDGYPSLLKEIATAPPVLFVKGRITALSDPQMAIVGSRNASPDGQRVAHQFAREFVQQGLLVTSGLALGIDGHAHDG
ALQAGGETIAVLGSGLESIYPARHKKLAQRVMESGALVSEFRPKAKPRPDNFPRRNRIISGLAVGVLVVEAAEKSGSLIT
ARYAAEQGRDVFVIPGSIANPNCHGSNQLIRCGACLVQNSEQVLSEIGTLVDWSLRQKQPQPDLFSVQSDQQLPFAELLA
NVGVEATPVDILASRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGKG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=61350 N175_RS00780 WP_017048702.1 161939..163048(-) (dprA) [Vibrio anguillarum M3]
ATGGAGCAGAACGAATTAGCGGCGTGGCTAGCATTCAGCTTTGTGCCAAAATTGGGTGGCAAGAAACTTTCTCGTCTTGC
TAGCGTCGCTTCTCTTGCTCATTTAATTGACTATTCCGAGCGGGAGTTAGCCGCGTTGGGTCTAGTTCAAGATCAAATCC
GTTATCTGCGCGAGACGGCCCCTCAAGAAGTTGAAGAATGCCTAAGTTGGCAGCAAGCTAATGAGTCTCATCATATCCTT
ACTCCATTTTGCGATGGTTATCCTTCTTTACTAAAAGAAATTGCTACCGCACCTCCGGTTTTATTTGTCAAAGGACGAAT
AACAGCACTCTCTGATCCGCAAATGGCGATCGTCGGCAGTCGTAATGCGAGCCCTGATGGCCAACGAGTTGCTCATCAGT
TTGCGCGAGAATTTGTGCAACAGGGCTTGCTTGTTACCAGTGGTTTGGCATTAGGTATTGATGGACATGCTCATGACGGT
GCGTTGCAAGCGGGTGGTGAGACGATAGCCGTGCTCGGTTCGGGCCTTGAATCTATTTACCCAGCGCGACATAAAAAATT
AGCGCAACGGGTGATGGAAAGCGGAGCATTAGTCTCGGAATTTCGTCCCAAAGCCAAACCAAGGCCAGATAACTTTCCGC
GGCGAAATCGCATTATCAGTGGGTTAGCGGTTGGTGTTTTAGTGGTGGAGGCGGCGGAGAAAAGTGGCTCGTTGATCACG
GCGCGCTATGCGGCTGAGCAAGGGCGAGATGTGTTTGTTATTCCGGGCTCCATTGCTAACCCAAATTGCCACGGTAGTAA
TCAACTTATTCGTTGTGGGGCGTGCTTGGTGCAAAACAGTGAACAAGTATTATCTGAAATTGGCACCTTAGTAGACTGGT
CATTGCGCCAAAAGCAGCCTCAACCTGATTTATTTTCTGTACAGAGCGATCAGCAATTGCCATTTGCTGAACTGTTAGCT
AACGTAGGAGTAGAGGCTACGCCTGTTGATATTCTTGCGAGCAGGACCCATATACCTGTCCATGAAGTCATGATGCAGCT
TTTAGAACTTGAGCTTTCAGGTCATGTTGTTGCCGTTTCTGGCGGCTATATTCGTAAGGGGAAGGGTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-278)

DprA winged helix domain (DprA_WH)

(316-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

64.208

99.187

0.637
  dprA Vibrio cholerae strain A1552

61.456

100

0.618
  dprA Glaesserella parasuis strain SC1401

45.333

100

0.461
  dprA Legionella pneumophila strain ERS1305867

43.802

98.374

0.431
  dprA Neisseria meningitidis strain C311

37.975

100

0.407
  dprA Neisseria meningitidis MC58

37.975

100

0.407
  dprA Neisseria gonorrhoeae MS11

36.387

100

0.388
  dprA Acinetobacter baumannii D1279779

40.51

95.664

0.388
  dprA Neisseria gonorrhoeae strain FA1090

36.132

100

0.385
  dprA Acinetobacter baumannii strain A118

39.943

95.664

0.382
  dprA Acinetobacter baylyi ADP1

41.742

90.244

0.377
  dprA Haemophilus influenzae Rd KW20

50.365

74.255

0.374

Multiple sequence alignment