Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | LGV34_RS08730 | Genome accession | NZ_CP084719 |
| Coordinates | 1791215..1791634 (-) | Length | 139 a.a. |
| NCBI ID | WP_268216751.1 | Uniprot ID | - |
| Organism | Staphylococcus chromogenes strain 76ME | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1786215..1796634
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGV34_RS08680 (LGV34_08685) | - | 1786402..1786791 (-) | 390 | WP_268216744.1 | hypothetical protein | - |
| LGV34_RS08685 (LGV34_08690) | - | 1786804..1787016 (-) | 213 | WP_252541024.1 | DUF3269 family protein | - |
| LGV34_RS08690 (LGV34_08695) | - | 1787016..1787204 (-) | 189 | WP_268216745.1 | hypothetical protein | - |
| LGV34_RS08695 (LGV34_08700) | - | 1787205..1787708 (-) | 504 | WP_268216746.1 | SA1788 family PVL leukocidin-associated protein | - |
| LGV34_RS08700 (LGV34_08705) | - | 1787710..1788138 (-) | 429 | WP_194747632.1 | RusA family crossover junction endodeoxyribonuclease | - |
| LGV34_RS08710 (LGV34_08715) | - | 1788302..1789087 (-) | 786 | WP_268216747.1 | ATP-binding protein | - |
| LGV34_RS08715 (LGV34_08720) | - | 1789088..1789849 (-) | 762 | WP_268216748.1 | conserved phage C-terminal domain-containing protein | - |
| LGV34_RS08720 (LGV34_08725) | - | 1789894..1790106 (+) | 213 | WP_268216749.1 | hypothetical protein | - |
| LGV34_RS08725 (LGV34_08730) | - | 1790532..1791200 (-) | 669 | WP_268216750.1 | putative HNHc nuclease | - |
| LGV34_RS08730 (LGV34_08735) | ssbA | 1791215..1791634 (-) | 420 | WP_268216751.1 | single-stranded DNA-binding protein | Machinery gene |
| LGV34_RS08735 (LGV34_08740) | - | 1791627..1792271 (-) | 645 | WP_268216752.1 | ERF family protein | - |
| LGV34_RS08740 (LGV34_08745) | - | 1792271..1792756 (-) | 486 | WP_268216753.1 | siphovirus Gp157 family protein | - |
| LGV34_RS08745 (LGV34_08750) | - | 1792753..1793007 (-) | 255 | WP_268217129.1 | DUF1108 family protein | - |
| LGV34_RS08750 (LGV34_08755) | - | 1793265..1793444 (-) | 180 | WP_107371909.1 | hypothetical protein | - |
| LGV34_RS08755 (LGV34_08760) | - | 1793625..1793864 (+) | 240 | WP_268216754.1 | hypothetical protein | - |
| LGV34_RS08760 (LGV34_08765) | - | 1793861..1794034 (-) | 174 | WP_268216755.1 | hypothetical protein | - |
| LGV34_RS08765 (LGV34_08770) | - | 1794219..1794380 (+) | 162 | WP_167696510.1 | hypothetical protein | - |
| LGV34_RS08770 (LGV34_08775) | - | 1794397..1794630 (-) | 234 | WP_165804958.1 | hypothetical protein | - |
| LGV34_RS08775 (LGV34_08780) | - | 1794721..1794930 (+) | 210 | WP_107366287.1 | hypothetical protein | - |
| LGV34_RS08780 (LGV34_08785) | - | 1794923..1795063 (-) | 141 | WP_096556146.1 | hypothetical protein | - |
| LGV34_RS08785 (LGV34_08790) | - | 1795076..1795831 (-) | 756 | WP_268216756.1 | phage antirepressor KilAC domain-containing protein | - |
| LGV34_RS08790 (LGV34_08795) | - | 1795955..1796224 (+) | 270 | WP_105985969.1 | DUF3892 domain-containing protein | - |
| LGV34_RS08795 (LGV34_08800) | - | 1796230..1796397 (-) | 168 | WP_268216757.1 | hypothetical protein | - |
| LGV34_RS08800 (LGV34_08805) | - | 1796410..1796628 (-) | 219 | WP_103345725.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 15649.27 Da Isoelectric Point: 4.9221
>NTDB_id=612743 LGV34_RS08730 WP_268216751.1 1791215..1791634(-) (ssbA) [Staphylococcus chromogenes strain 76ME]
MLNRAVLVGRLTKDPEFRTTPSGVDVSTFTLAVNRNFKNKDGEQQADFINCVIFRKQAENVKNFLSKGSLAGVDGRMQSR
SYENKEGQRVYVTEVVCDSVQFLEPKNNGQSNNQPKQQQGQAQDNPFDNSNLDDDDLPF
MLNRAVLVGRLTKDPEFRTTPSGVDVSTFTLAVNRNFKNKDGEQQADFINCVIFRKQAENVKNFLSKGSLAGVDGRMQSR
SYENKEGQRVYVTEVVCDSVQFLEPKNNGQSNNQPKQQQGQAQDNPFDNSNLDDDDLPF
Nucleotide
Download Length: 420 bp
>NTDB_id=612743 LGV34_RS08730 WP_268216751.1 1791215..1791634(-) (ssbA) [Staphylococcus chromogenes strain 76ME]
ATGCTTAACAGAGCCGTATTAGTAGGACGATTAACTAAAGACCCGGAATTTAGAACAACGCCATCAGGTGTAGACGTATC
AACATTCACACTTGCGGTAAATCGCAATTTCAAAAATAAAGATGGAGAACAACAGGCGGATTTCATCAATTGTGTAATTT
TCCGCAAGCAAGCTGAAAACGTCAAAAACTTTTTAAGTAAAGGTAGCTTAGCAGGCGTTGATGGACGGATGCAATCACGC
AGTTACGAAAATAAAGAAGGTCAACGTGTATATGTCACGGAAGTTGTGTGCGACAGTGTGCAATTTTTAGAACCTAAAAA
TAATGGTCAATCAAACAATCAACCTAAACAACAACAAGGGCAGGCGCAGGATAATCCGTTTGATAATAGCAACCTTGATG
ACGACGACCTTCCGTTCTGA
ATGCTTAACAGAGCCGTATTAGTAGGACGATTAACTAAAGACCCGGAATTTAGAACAACGCCATCAGGTGTAGACGTATC
AACATTCACACTTGCGGTAAATCGCAATTTCAAAAATAAAGATGGAGAACAACAGGCGGATTTCATCAATTGTGTAATTT
TCCGCAAGCAAGCTGAAAACGTCAAAAACTTTTTAAGTAAAGGTAGCTTAGCAGGCGTTGATGGACGGATGCAATCACGC
AGTTACGAAAATAAAGAAGGTCAACGTGTATATGTCACGGAAGTTGTGTGCGACAGTGTGCAATTTTTAGAACCTAAAAA
TAATGGTCAATCAAACAATCAACCTAAACAACAACAAGGGCAGGCGCAGGATAATCCGTTTGATAATAGCAACCTTGATG
ACGACGACCTTCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.233 |
100 |
0.683 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50 |
100 |
0.612 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
76.259 |
0.446 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.781 |
100 |
0.439 |
| ssbA | Streptococcus mutans UA159 |
41.007 |
100 |
0.41 |
| ssb | Vibrio cholerae strain A1552 |
30.814 |
100 |
0.381 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
37.41 |
100 |
0.374 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
37.41 |
100 |
0.374 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
36.691 |
100 |
0.367 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
36.691 |
100 |
0.367 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
36.691 |
100 |
0.367 |
| ssbB/cilA | Streptococcus mitis SK321 |
36.691 |
100 |
0.367 |