Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   LA387_RS07350 Genome accession   NZ_CP084377
Coordinates   1434336..1434641 (-) Length   101 a.a.
NCBI ID   WP_016171026.1    Uniprot ID   -
Organism   Lactococcus garvieae strain Lg-Granada     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1429336..1439641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA387_RS07325 - 1431226..1432095 (+) 870 WP_003133725.1 RluA family pseudouridine synthase -
  LA387_RS07330 - 1432181..1433026 (-) 846 WP_003133722.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  LA387_RS07335 comGF 1433259..1433699 (-) 441 WP_003133720.1 competence type IV pilus minor pilin ComGF -
  LA387_RS07340 comGE 1433680..1433913 (-) 234 WP_229031266.1 competence type IV pilus minor pilin ComGE -
  LA387_RS07345 comGD 1433945..1434361 (-) 417 WP_003133718.1 competence type IV pilus minor pilin ComGD Machinery gene
  LA387_RS07350 comYC 1434336..1434641 (-) 306 WP_016171026.1 competence type IV pilus major pilin ComGC Machinery gene
  LA387_RS07355 comGB 1434660..1435679 (-) 1020 WP_263867708.1 competence type IV pilus assembly protein ComGB Machinery gene
  LA387_RS07360 comGA 1435618..1436562 (-) 945 WP_003133715.1 competence type IV pilus ATPase ComGA Machinery gene
  LA387_RS07365 rpsU 1436750..1436926 (-) 177 WP_003134539.1 30S ribosomal protein S21 -
  LA387_RS07370 guaB 1437049..1438530 (-) 1482 WP_003133714.1 IMP dehydrogenase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11397.28 Da        Isoelectric Point: 9.9218

>NTDB_id=610863 LA387_RS07350 WP_016171026.1 1434336..1434641(-) (comYC) [Lactococcus garvieae strain Lg-Granada]
MEKKRFKAFTLIEMLVVLLIISVLLLLFVPNLSKEKKNIQNTGQTAVVKVVEGQAELYQLDKQDSPSLGKLVSGGLITQK
QADSYNDYYTKNPNEKRNVPN

Nucleotide


Download         Length: 306 bp        

>NTDB_id=610863 LA387_RS07350 WP_016171026.1 1434336..1434641(-) (comYC) [Lactococcus garvieae strain Lg-Granada]
ATGGAAAAAAAGAGGTTCAAAGCTTTTACTTTGATTGAAATGCTTGTCGTCTTACTTATTATCAGTGTCTTACTTTTATT
GTTTGTCCCAAATTTGTCTAAAGAAAAGAAGAATATCCAAAATACGGGTCAAACAGCGGTTGTTAAAGTTGTCGAAGGTC
AAGCTGAACTTTATCAACTTGATAAACAGGATAGTCCTAGCTTAGGGAAACTTGTCTCCGGTGGGTTAATTACACAGAAA
CAAGCCGATAGCTACAATGATTATTATACTAAGAACCCTAATGAAAAACGTAATGTACCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

62.745

100

0.634
  comYC Streptococcus mutans UA140

67.368

94.059

0.634
  comYC Streptococcus mutans UA159

67.368

94.059

0.634
  comGC Lactococcus lactis subsp. cremoris KW2

62

99.01

0.614
  comGC/cglC Streptococcus mitis SK321

61.616

98.02

0.604
  comGC/cglC Streptococcus pneumoniae Rx1

57.576

98.02

0.564
  comGC/cglC Streptococcus pneumoniae D39

57.576

98.02

0.564
  comGC/cglC Streptococcus pneumoniae TIGR4

57.576

98.02

0.564
  comGC/cglC Streptococcus pneumoniae R6

57.576

98.02

0.564
  comGC/cglC Streptococcus mitis NCTC 12261

61.538

90.099

0.554
  comYC Streptococcus suis isolate S10

58.025

80.198

0.465
  comGC Staphylococcus aureus MW2

49.367

78.218

0.386
  comGC Staphylococcus aureus N315

49.367

78.218

0.386