Detailed information NTG0610745

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: LEO81_RS02320
• Genome accession: NZ_CP084351
• Coordinates: 500426..501667 (-)
• Length: 413 a.a.
• NCBI ID: WP_226014236.1
• Uniprot ID: -
• Organism: Aeromonas dhakensis strain 71431
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 495426..506667

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LEO81_RS02290 (LEO81_02290)	-	496271..497449 (+)	1179	WP_025202562.1	tetratricopeptide repeat protein	-
LEO81_RS02295 (LEO81_02295)	mutT	497458..497871 (+)	414	WP_005305665.1	8-oxo-dGTP diphosphatase MutT	-
LEO81_RS02300 (LEO81_02300)	yacG	497933..498127 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
LEO81_RS02305 (LEO81_02305)	zapD	498137..498859 (-)	723	WP_025202564.1	cell division protein ZapD	-
LEO81_RS02310 (LEO81_02310)	coaE	498897..499511 (-)	615	WP_017766418.1	dephospho-CoA kinase	-
LEO81_RS02315 (LEO81_02315)	pilD	499531..500403 (-)	873	WP_226014235.1	A24 family peptidase	Machinery gene
LEO81_RS02320 (LEO81_02320)	pilC	500426..501667 (-)	1242	WP_226014236.1	type II secretion system F family protein	Machinery gene
LEO81_RS02325 (LEO81_02325)	pilB	501783..503489 (-)	1707	WP_226014237.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
LEO81_RS02330 (LEO81_02330)	pilA2	503499..503912 (-)	414	WP_226014238.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
LEO81_RS02335 (LEO81_02335)	nadC	504233..505090 (-)	858	WP_226014239.1	carboxylating nicotinate-nucleotide diphosphorylase	-
LEO81_RS02340 (LEO81_02340)	-	505095..505565 (-)	471	WP_010635963.1	TIGR02281 family clan AA aspartic protease	-
LEO81_RS02345 (LEO81_02345)	ampD	505689..506261 (+)	573	WP_226014240.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-

Sequence

Protein

• Length: 413 a.a.
• Molecular weight: 45470.60 Da
• Isoelectric Point: 9.8734

>NTDB_id=610745 LEO81_RS02320 WP_226014236.1 500426..501667(-) (pilC) [Aeromonas dhakensis strain 71431]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPAFTQFVIGISRFMQNWWYMIFGGVA
LAIFLYVRAWRASQKVRDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMTIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide

• Length: 1242 bp

>NTDB_id=610745 LEO81_RS02320 WP_226014236.1 500426..501667(-) (pilC) [Aeromonas dhakensis strain 71431]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTTGCCTTTCGCTGGAGCGGGGTGAACCGCAAGGGCCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACGGTCAAGGCCGAGCTGCGCAAGCAGGGCGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTCTTCTCCAAGGGTGGCGCCAAGATAAAGCCGATGGATATTGCCGTCGTCTCTCGC
CAGATCACCACCATGCTGTCGGCCGGCGTACCTCTGGTCCAGAGCCTGCAGATCATCGCTCGCAGCCACGAGAAGGCGGC
CATGCGCGAGCTGATGGGCCAGATAGCCGCCGATGTGGAGACCGGCACCCCCATGTCCGAGGCGCTGCGCCGCCATCCCC
GCCACTTCGATGATCTCTATTGCGACCTGGTCGAGGCGGGCGAGCAGTCCGGCGCCCTGGAGACCATCTACGACCGCATC
GCGACTTATCGCGAAAAGTCCGAAGCGCTCAAATCCAAGATCAAGAAGGCCATGTTCTACCCCACCATGGTCATCCTGGT
CGCCATTGTCGTCACTTCCATTCTGCTGCTGTTTGTCATTCCGCAGTTTGAGGACATCTTCAAGAGTTTCGGCGCCGAGC
TGCCCGCCTTTACCCAGTTCGTCATCGGCATCTCCCGCTTCATGCAGAACTGGTGGTATATGATCTTTGGCGGGGTTGCA
CTCGCCATCTTCCTCTACGTGCGAGCCTGGCGCGCCTCGCAGAAAGTCAGAGACAACACCGACAAGTTCATTCTGACCAT
CCCGGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTTTCTGCTGGTA
TCCCGCTGGTGGATGCCCTGATCTCCGCCGCAGGCGCCTCCGGCAACTATGTCTATCGCACCGCCGTCATGACCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATTGGCGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCTACCATCTTCGAACAAGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAACCTCTCATCATGGTGGTGCTGGGGGTACTGGTCGGCGGCATGGTGGTCGCC
ATGTACCTGCCCATCTTCAAACTGGGGTCGGTCATCCACTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (282-404)

• Type II secretion system (T2SS), protein F (T2SSF) (79-201)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	57.576	95.884	0.552
pilC	Acinetobacter baumannii D1279779	54.25	96.852	0.525
pilC	Legionella pneumophila strain ERS1305867	51.605	98.063	0.506
pilC	Acinetobacter baylyi ADP1	52.393	96.126	0.504
pilC	Vibrio cholerae strain A1552	47.99	96.368	0.462
pilC	Vibrio campbellii strain DS40M4	47.355	96.126	0.455
pilG	Neisseria meningitidis 44/76-A	40.494	98.063	0.397
pilG	Neisseria gonorrhoeae MS11	40.494	98.063	0.397
pilC	Thermus thermophilus HB27	37.75	96.852	0.366