Detailed information NTG0610744

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LEO81_RS02315
• Genome accession: NZ_CP084351
• Coordinates: 499531..500403 (-)
• Length: 290 a.a.
• NCBI ID: WP_226014235.1
• Uniprot ID: -
• Organism: Aeromonas dhakensis strain 71431
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 494531..505403

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LEO81_RS02290 (LEO81_02290)	-	496271..497449 (+)	1179	WP_025202562.1	tetratricopeptide repeat protein	-
LEO81_RS02295 (LEO81_02295)	mutT	497458..497871 (+)	414	WP_005305665.1	8-oxo-dGTP diphosphatase MutT	-
LEO81_RS02300 (LEO81_02300)	yacG	497933..498127 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
LEO81_RS02305 (LEO81_02305)	zapD	498137..498859 (-)	723	WP_025202564.1	cell division protein ZapD	-
LEO81_RS02310 (LEO81_02310)	coaE	498897..499511 (-)	615	WP_017766418.1	dephospho-CoA kinase	-
LEO81_RS02315 (LEO81_02315)	pilD	499531..500403 (-)	873	WP_226014235.1	A24 family peptidase	Machinery gene
LEO81_RS02320 (LEO81_02320)	pilC	500426..501667 (-)	1242	WP_226014236.1	type II secretion system F family protein	Machinery gene
LEO81_RS02325 (LEO81_02325)	pilB	501783..503489 (-)	1707	WP_226014237.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
LEO81_RS02330 (LEO81_02330)	pilA2	503499..503912 (-)	414	WP_226014238.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
LEO81_RS02335 (LEO81_02335)	nadC	504233..505090 (-)	858	WP_226014239.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32483.78 Da
• Isoelectric Point: 6.7410

>NTDB_id=610744 LEO81_RS02315 WP_226014235.1 499531..500403(-) (pilD) [Aeromonas dhakensis strain 71431]
MLLITDVFHSLSWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLSYFNPETQLQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFPPSWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLSNLAGGFVPLTDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGISLILLRNHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=610744 LEO81_RS02315 WP_226014235.1 499531..500403(-) (pilD) [Aeromonas dhakensis strain 71431]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGTCCTGGCTCTATTTTTCGCTGGTATTCCTCTTCTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATACCTCAGCTATTTCA
ACCCAGAGACACAACTGCAGCAGGAGGAACGCTACAACCTGATGGTACCGCGTTCTGCCTGCCCCCATTGCGGCCACGCC
ATCACGGCCATGGAGAATATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGTCGCTGCCGTGAATGTCAGGCCCCCATCTC
GGCCCGTTATCCGCTGGTGGAGCTGCTGACAGCTCTGCTCTCGCTGGTCGTCGCCGCAACATTTCCACCGAGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTGACCCTGCCACTGCTGTGGGGTGGCCTGCTGTCCAATCTGGCAGGGGGATTCGTTCCGCTGACCGATGCGGTGATCGG
TGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTACG
GCGACTTCAAGCTGCTGGCGGCGCTGGGGGCCTGGCTCGGCTGGCAGGCCCTGCCCATCGTGTTGCTGCTCTCCTCCCTG
GTCGGCGCCATAATAGGGATAAGTCTCATCCTGCTGCGTAACCATCATCAGGGCAAACCCATCCCTTTCGGGCCCTACCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.538	98.621	0.607
pilD	Vibrio campbellii strain DS40M4	58.478	99.655	0.583
pilD	Acinetobacter baumannii D1279779	54.577	97.931	0.534
pilD	Acinetobacter nosocomialis M2	54.577	97.931	0.534
pilD	Neisseria gonorrhoeae MS11	49.084	94.138	0.462