Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   M493_RS15390 Genome accession   NC_022080
Coordinates   3072766..3073125 (-) Length   119 a.a.
NCBI ID   WP_020961304.1    Uniprot ID   -
Organism   Geobacillus genomosp. 3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3067766..3078125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M493_RS15365 (M493_16500) - 3068031..3068444 (-) 414 WP_020961299.1 hypothetical protein -
  M493_RS15370 (M493_16505) wecB 3068527..3069672 (-) 1146 WP_020961300.1 non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase -
  M493_RS15375 (M493_16510) - 3069952..3071310 (-) 1359 WP_020961301.1 peptidoglycan-binding protein -
  M493_RS15380 (M493_16515) - 3071524..3072018 (-) 495 WP_081713499.1 hypothetical protein -
  M493_RS15385 (M493_16520) - 3072234..3072644 (+) 411 WP_020961303.1 helix-turn-helix domain-containing protein -
  M493_RS15390 (M493_16525) ssbB 3072766..3073125 (-) 360 WP_020961304.1 single-stranded DNA-binding protein Machinery gene
  M493_RS15395 (M493_16530) - 3073397..3073837 (+) 441 WP_020961305.1 YwpF-like family protein -
  M493_RS15400 (M493_16535) - 3073888..3074610 (-) 723 WP_020961306.1 class D sortase -
  M493_RS15405 (M493_16540) - 3074617..3075549 (-) 933 WP_020961307.1 processed acidic surface protein -
  M493_RS15410 (M493_16545) - 3075696..3077072 (-) 1377 WP_020961308.1 aspartate kinase -
  M493_RS15415 (M493_16550) - 3077221..3077655 (-) 435 WP_020961309.1 DUF1284 domain-containing protein -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13514.37 Da        Isoelectric Point: 9.5568

>NTDB_id=61068 M493_RS15390 WP_020961304.1 3072766..3073125(-) (ssbB) [Geobacillus genomosp. 3]
MHRNMINQVVLVGRLTKDPELRYTAEGAAVTTVTLAVARNFRNTEGGIDADFVPCVLWRKTAEHTAHYCRKGSMVAVTGR
IQTRRYDNKEGQRVYVTEVVADSVQFLHSGKTREWPEHV

Nucleotide


Download         Length: 360 bp        

>NTDB_id=61068 M493_RS15390 WP_020961304.1 3072766..3073125(-) (ssbB) [Geobacillus genomosp. 3]
ATGCACCGGAACATGATCAATCAAGTCGTACTTGTCGGCCGGTTGACGAAGGATCCGGAACTTCGCTACACGGCCGAAGG
AGCGGCCGTCACGACCGTCACCTTGGCGGTGGCGAGAAATTTCCGCAACACGGAAGGGGGGATTGATGCCGATTTCGTTC
CATGTGTGTTATGGCGGAAAACGGCGGAACATACCGCCCATTACTGCCGGAAAGGATCGATGGTGGCGGTAACGGGAAGA
ATCCAGACGCGCCGCTATGACAATAAAGAAGGTCAACGCGTCTATGTGACGGAAGTCGTCGCTGATTCGGTTCAGTTTCT
TCACTCCGGCAAAACACGGGAATGGCCGGAGCACGTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.273

92.437

0.622
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.462

87.395

0.555
  ssb Latilactobacillus sakei subsp. sakei 23K

59.091

92.437

0.546
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.491

95.798

0.445
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.86

95.798

0.42
  ssbB/cilA Streptococcus mitis NCTC 12261

43.86

95.798

0.42
  ssbA Streptococcus mutans UA159

43.86

95.798

0.42
  ssbB/cilA Streptococcus pneumoniae Rx1

42.982

95.798

0.412
  ssbB/cilA Streptococcus pneumoniae D39

42.982

95.798

0.412
  ssbB/cilA Streptococcus pneumoniae R6

42.982

95.798

0.412
  ssbB/cilA Streptococcus mitis SK321

42.982

95.798

0.412
  ssbB Lactococcus lactis subsp. cremoris KW2

42.056

89.916

0.378

Multiple sequence alignment