Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | I6G24_RS12815 | Genome accession | NZ_CP084189 |
| Coordinates | 2434391..2434816 (+) | Length | 141 a.a. |
| NCBI ID | WP_023164532.1 | Uniprot ID | - |
| Organism | Lactococcus lactis strain FDAARGOS_867 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2429391..2439816
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6G24_RS12755 (I6G24_12760) | - | 2429674..2429907 (+) | 234 | WP_023164540.1 | hypothetical protein | - |
| I6G24_RS12760 (I6G24_12765) | - | 2430014..2430223 (+) | 210 | WP_023164539.1 | hypothetical protein | - |
| I6G24_RS12765 (I6G24_12770) | - | 2430263..2430457 (+) | 195 | WP_023164538.1 | hypothetical protein | - |
| I6G24_RS12770 (I6G24_12775) | - | 2430451..2430717 (-) | 267 | WP_015966961.1 | hypothetical protein | - |
| I6G24_RS12775 (I6G24_12780) | - | 2430820..2431068 (+) | 249 | WP_011835843.1 | helix-turn-helix transcriptional regulator | - |
| I6G24_RS12780 (I6G24_12785) | - | 2431080..2431838 (+) | 759 | WP_023164537.1 | phage antirepressor KilAC domain-containing protein | - |
| I6G24_RS12785 (I6G24_12790) | - | 2431851..2432120 (+) | 270 | WP_023164536.1 | hypothetical protein | - |
| I6G24_RS12790 (I6G24_12795) | - | 2432213..2432446 (+) | 234 | WP_023164535.1 | hypothetical protein | - |
| I6G24_RS12795 (I6G24_12800) | - | 2432401..2432679 (-) | 279 | WP_011834777.1 | hypothetical protein | - |
| I6G24_RS12800 (I6G24_12805) | - | 2432782..2432997 (+) | 216 | WP_010905687.1 | DUF1408 domain-containing protein | - |
| I6G24_RS12805 (I6G24_12810) | - | 2433113..2433631 (+) | 519 | WP_010905688.1 | host-nuclease inhibitor Gam family protein | - |
| I6G24_RS12810 (I6G24_12815) | - | 2433640..2434398 (+) | 759 | WP_023164533.1 | Rad52/Rad22 family DNA repair protein | - |
| I6G24_RS12815 (I6G24_12820) | ssb | 2434391..2434816 (+) | 426 | WP_023164532.1 | single-stranded DNA-binding protein | Machinery gene |
| I6G24_RS12820 (I6G24_12825) | - | 2434941..2435702 (+) | 762 | WP_023164531.1 | conserved phage C-terminal domain-containing protein | - |
| I6G24_RS12825 (I6G24_12830) | - | 2435712..2436602 (+) | 891 | WP_023164371.1 | ATP-binding protein | - |
| I6G24_RS12830 (I6G24_12835) | - | 2436612..2436776 (+) | 165 | WP_023164530.1 | hypothetical protein | - |
| I6G24_RS12835 (I6G24_12840) | - | 2436766..2437176 (+) | 411 | WP_023164529.1 | hypothetical protein | - |
| I6G24_RS12840 (I6G24_12845) | - | 2437487..2437705 (+) | 219 | WP_023164528.1 | hypothetical protein | - |
| I6G24_RS12845 (I6G24_12850) | - | 2437702..2437899 (+) | 198 | WP_011835825.1 | DUF1125 domain-containing protein | - |
| I6G24_RS12850 (I6G24_12855) | - | 2437914..2438546 (-) | 633 | WP_023164527.1 | hypothetical protein | - |
| I6G24_RS12855 (I6G24_12860) | - | 2438610..2438792 (+) | 183 | WP_021037750.1 | hypothetical protein | - |
| I6G24_RS12860 (I6G24_12865) | - | 2438785..2439348 (+) | 564 | WP_023164526.1 | DUF1642 domain-containing protein | - |
| I6G24_RS12865 (I6G24_12870) | - | 2439345..2439764 (+) | 420 | WP_023164525.1 | dUTP diphosphatase | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15672.41 Da Isoelectric Point: 5.1972
>NTDB_id=609973 I6G24_RS12815 WP_023164532.1 2434391..2434816(+) (ssb) [Lactococcus lactis strain FDAARGOS_867]
MINNVTLVGRITKEPELRYTPQNKAVATFTLAVNRAFKNANGEREADFISCVIWGKSAENLANWTHKGQLIGVIGNIQTR
NYENQQGQRVYITEVVASNFQVLEKSNQANGERVGNPASKPQNNDSFGSDPMEISDDDLPF
MINNVTLVGRITKEPELRYTPQNKAVATFTLAVNRAFKNANGEREADFISCVIWGKSAENLANWTHKGQLIGVIGNIQTR
NYENQQGQRVYITEVVASNFQVLEKSNQANGERVGNPASKPQNNDSFGSDPMEISDDDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=609973 I6G24_RS12815 WP_023164532.1 2434391..2434816(+) (ssb) [Lactococcus lactis strain FDAARGOS_867]
ATGATTAACAATGTCACTCTAGTAGGGCGAATTACTAAAGAACCTGAACTTAGATATACACCACAAAATAAAGCAGTTGC
CACTTTTACTCTTGCAGTTAATCGAGCATTTAAAAATGCTAATGGAGAAAGAGAAGCTGACTTTATCAGTTGTGTTATTT
GGGGTAAATCAGCCGAAAACTTGGCCAATTGGACTCATAAAGGTCAATTAATTGGAGTTATTGGGAATATCCAAACTCGA
AACTATGAGAACCAACAAGGGCAACGTGTTTATATTACGGAGGTTGTCGCAAGTAATTTCCAAGTACTAGAAAAAAGTAA
TCAAGCAAATGGTGAACGAGTTGGTAATCCAGCTTCAAAACCACAAAATAATGATTCTTTTGGAAGTGATCCGATGGAAA
TTTCAGATGATGACCTACCATTTTAA
ATGATTAACAATGTCACTCTAGTAGGGCGAATTACTAAAGAACCTGAACTTAGATATACACCACAAAATAAAGCAGTTGC
CACTTTTACTCTTGCAGTTAATCGAGCATTTAAAAATGCTAATGGAGAAAGAGAAGCTGACTTTATCAGTTGTGTTATTT
GGGGTAAATCAGCCGAAAACTTGGCCAATTGGACTCATAAAGGTCAATTAATTGGAGTTATTGGGAATATCCAAACTCGA
AACTATGAGAACCAACAAGGGCAACGTGTTTATATTACGGAGGTTGTCGCAAGTAATTTCCAAGTACTAGAAAAAAGTAA
TCAAGCAAATGGTGAACGAGTTGGTAATCCAGCTTCAAAACCACAAAATAATGATTCTTTTGGAAGTGATCCGATGGAAA
TTTCAGATGATGACCTACCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
53.529 |
100 |
0.645 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
51.744 |
100 |
0.631 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
42.553 |
100 |
0.426 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
42.553 |
100 |
0.426 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
42.553 |
100 |
0.426 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.731 |
73.759 |
0.418 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
41.844 |
100 |
0.418 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
41.844 |
100 |
0.418 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
41.844 |
100 |
0.418 |
| ssbB/cilA | Streptococcus mitis SK321 |
41.844 |
100 |
0.418 |
| ssbA | Streptococcus mutans UA159 |
39.007 |
100 |
0.39 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
51.456 |
73.05 |
0.376 |