Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   I6G24_RS11450 Genome accession   NZ_CP084189
Coordinates   2194028..2194297 (+) Length   89 a.a.
NCBI ID   WP_023349160.1    Uniprot ID   A0AB35KDE0
Organism   Lactococcus lactis strain FDAARGOS_867     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2189028..2199297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G24_RS11440 (I6G24_11445) comGA 2191995..2192933 (+) 939 WP_031561106.1 competence type IV pilus ATPase ComGA Machinery gene
  I6G24_RS11445 (I6G24_11450) comGB 2192827..2193900 (+) 1074 WP_010906319.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6G24_RS11450 (I6G24_11455) comGC 2194028..2194297 (+) 270 WP_023349160.1 competence type IV pilus major pilin ComGC Machinery gene
  I6G24_RS11455 (I6G24_11460) comGD 2194272..2194688 (+) 417 WP_225509978.1 competence type IV pilus minor pilin ComGD Machinery gene
  I6G24_RS11460 (I6G24_11465) comGE 2194660..2194956 (+) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  I6G24_RS11465 (I6G24_11470) comGF 2194919..2195365 (+) 447 WP_031558968.1 competence type IV pilus minor pilin ComGF Machinery gene
  I6G24_RS11470 (I6G24_11475) comGG 2195404..2195688 (+) 285 WP_010906314.1 competence type IV pilus minor pilin ComGG Machinery gene
  I6G24_RS11475 (I6G24_11480) - 2195769..2196206 (+) 438 WP_010906313.1 zinc-dependent MarR family transcriptional regulator -
  I6G24_RS11480 (I6G24_11485) - 2196203..2197045 (+) 843 WP_015427160.1 metal ABC transporter substrate-binding protein -
  I6G24_RS11485 (I6G24_11490) - 2197222..2197959 (+) 738 WP_012898617.1 metal ABC transporter ATP-binding protein -
  I6G24_RS11490 (I6G24_11495) - 2197952..2198761 (+) 810 WP_010906310.1 metal ABC transporter permease -

Sequence

Protein


Download         Length: 89 a.a.        Molecular weight: 10113.52 Da        Isoelectric Point: 4.2950

>NTDB_id=609961 I6G24_RS11450 WP_023349160.1 2194028..2194297(+) (comGC) [Lactococcus lactis strain FDAARGOS_867]
MLIVLAIISILILLFVPNLIKEKSQVQKTGEAAVVKVVESQAQLYELDHDDEKPSLSELLSAGMITQKQISAYDNYYDQN
KNEERNFND

Nucleotide


Download         Length: 270 bp        

>NTDB_id=609961 I6G24_RS11450 WP_023349160.1 2194028..2194297(+) (comGC) [Lactococcus lactis strain FDAARGOS_867]
ATGTTAATTGTACTAGCTATTATTAGTATTTTGATATTACTATTTGTTCCAAATTTAATTAAAGAAAAATCACAAGTTCA
AAAAACTGGAGAAGCGGCAGTTGTCAAAGTAGTAGAAAGTCAAGCTCAACTTTATGAATTAGATCATGATGATGAGAAGC
CGAGTCTGTCAGAATTGCTCAGTGCAGGGATGATTACTCAAAAACAAATTTCTGCTTACGATAATTACTATGATCAGAAT
AAAAATGAAGAACGAAATTTTAATGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Lactococcus lactis subsp. cremoris KW2

88

84.27

0.742
  comYC Streptococcus gordonii str. Challis substr. CH1

57.647

95.506

0.551
  comGC/cglC Streptococcus pneumoniae Rx1

55.056

100

0.551
  comGC/cglC Streptococcus pneumoniae D39

55.056

100

0.551
  comGC/cglC Streptococcus pneumoniae R6

55.056

100

0.551
  comGC/cglC Streptococcus pneumoniae TIGR4

55.056

100

0.551
  comYC Streptococcus suis isolate S10

58.904

82.022

0.483
  comGC/cglC Streptococcus mitis SK321

55.263

85.393

0.472
  comYC Streptococcus mutans UA140

52.055

82.022

0.427
  comYC Streptococcus mutans UA159

52.055

82.022

0.427
  comGC/cglC Streptococcus mitis NCTC 12261

57.812

71.91

0.416