Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   I6G24_RS11455 Genome accession   NZ_CP084189
Coordinates   2194272..2194688 (+) Length   138 a.a.
NCBI ID   WP_225509978.1    Uniprot ID   -
Organism   Lactococcus lactis strain FDAARGOS_867     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2189272..2199688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G24_RS11440 (I6G24_11445) comGA 2191995..2192933 (+) 939 WP_031561106.1 competence type IV pilus ATPase ComGA Machinery gene
  I6G24_RS11445 (I6G24_11450) comGB 2192827..2193900 (+) 1074 WP_010906319.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6G24_RS11450 (I6G24_11455) comGC 2194028..2194297 (+) 270 WP_023349160.1 competence type IV pilus major pilin ComGC Machinery gene
  I6G24_RS11455 (I6G24_11460) comGD 2194272..2194688 (+) 417 WP_225509978.1 competence type IV pilus minor pilin ComGD Machinery gene
  I6G24_RS11460 (I6G24_11465) comGE 2194660..2194956 (+) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  I6G24_RS11465 (I6G24_11470) comGF 2194919..2195365 (+) 447 WP_031558968.1 competence type IV pilus minor pilin ComGF Machinery gene
  I6G24_RS11470 (I6G24_11475) comGG 2195404..2195688 (+) 285 WP_010906314.1 competence type IV pilus minor pilin ComGG Machinery gene
  I6G24_RS11475 (I6G24_11480) - 2195769..2196206 (+) 438 WP_010906313.1 zinc-dependent MarR family transcriptional regulator -
  I6G24_RS11480 (I6G24_11485) - 2196203..2197045 (+) 843 WP_015427160.1 metal ABC transporter substrate-binding protein -
  I6G24_RS11485 (I6G24_11490) - 2197222..2197959 (+) 738 WP_012898617.1 metal ABC transporter ATP-binding protein -
  I6G24_RS11490 (I6G24_11495) - 2197952..2198761 (+) 810 WP_010906310.1 metal ABC transporter permease -
  I6G24_RS11495 (I6G24_11500) - 2198800..2199666 (-) 867 WP_010906309.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15890.64 Da        Isoelectric Point: 7.9826

>NTDB_id=609962 I6G24_RS11455 WP_225509978.1 2194272..2194688(+) (comGD) [Lactococcus lactis strain FDAARGOS_867]
MKNEILMTKAFTLLESLLVLLITSFITTLFSLEIIQTIHLFKGELFVLQFENFYKRSQEDAALLQKSESLVAKNQELICE
DRSITIPKEVAVKDFTVKFDDKGENSSLQKLTISLPYEKKFITYQLEIGSGKFKKKIS

Nucleotide


Download         Length: 417 bp        

>NTDB_id=609962 I6G24_RS11455 WP_225509978.1 2194272..2194688(+) (comGD) [Lactococcus lactis strain FDAARGOS_867]
ATGAAGAACGAAATTTTAATGACTAAAGCATTTACTTTACTAGAGTCTCTTCTAGTTTTGTTGATTACTTCTTTTATCAC
AACTCTTTTTTCTTTAGAAATAATACAAACAATCCATCTTTTTAAGGGAGAATTGTTTGTTCTTCAATTTGAAAATTTCT
ATAAAAGGAGTCAAGAAGATGCTGCACTGCTTCAAAAATCTGAAAGTTTAGTTGCTAAAAATCAAGAATTAATCTGTGAA
GATAGAAGTATCACAATTCCAAAGGAGGTAGCAGTTAAAGATTTTACAGTTAAATTTGATGATAAGGGAGAGAATTCTAG
CTTACAAAAACTCACAATTTCTTTACCTTACGAAAAAAAGTTCATCACTTATCAATTGGAGATAGGCAGTGGAAAATTTA
AAAAGAAAATCAGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

65.942

100

0.659
  comYD Streptococcus gordonii str. Challis substr. CH1

40.458

94.928

0.384
  comYD Streptococcus mutans UA140

41.406

92.754

0.384
  comYD Streptococcus mutans UA159

41.406

92.754

0.384