Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LCF45_RS10695 Genome accession   NZ_CP084035
Coordinates   2081288..2081632 (+) Length   114 a.a.
NCBI ID   WP_016120134.1    Uniprot ID   R8N3J7
Organism   Bacillus sp. 41-22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2076288..2086632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCF45_RS10670 (LCF45_10645) - 2076584..2077321 (-) 738 WP_059038030.1 hypothetical protein -
  LCF45_RS10675 (LCF45_10650) - 2077431..2078078 (+) 648 WP_263894798.1 HD domain-containing protein -
  LCF45_RS10680 (LCF45_10655) - 2078075..2079970 (+) 1896 WP_002127139.1 ABC-F family ATP-binding cassette domain-containing protein -
  LCF45_RS10685 (LCF45_10660) - 2080046..2080777 (+) 732 WP_016126856.1 Bax inhibitor-1/YccA family membrane protein -
  LCF45_RS10690 (LCF45_10665) - 2080872..2081126 (+) 255 WP_002127142.1 DUF4318 domain-containing protein -
  LCF45_RS10695 (LCF45_10670) ssbA 2081288..2081632 (+) 345 WP_016120134.1 single-stranded DNA-binding protein Machinery gene
  LCF45_RS10700 (LCF45_10675) - 2081782..2082909 (+) 1128 WP_002012566.1 conserved virulence factor C family protein -
  LCF45_RS10705 (LCF45_10680) - 2082913..2083296 (+) 384 WP_002085930.1 thiol-disulfide oxidoreductase DCC family protein -
  LCF45_RS10710 (LCF45_10685) - 2083379..2083813 (+) 435 WP_002012568.1 BrxA/BrxB family bacilliredoxin -
  LCF45_RS10715 (LCF45_10690) - 2083863..2084639 (+) 777 WP_002127165.1 class I SAM-dependent methyltransferase -
  LCF45_RS10720 (LCF45_10695) argS 2084940..2086628 (+) 1689 WP_003188971.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 13258.10 Da        Isoelectric Point: 9.3950

>NTDB_id=609171 LCF45_RS10695 WP_016120134.1 2081288..2081632(+) (ssbA) [Bacillus sp. 41-22]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRRSAENVTEYCTKGSLVGITGRIHTS
NYDDEQGKRVYRTEVLIENITFLERRRESASQKY

Nucleotide


Download         Length: 345 bp        

>NTDB_id=609171 LCF45_RS10695 WP_016120134.1 2081288..2081632(+) (ssbA) [Bacillus sp. 41-22]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGTGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGTTTTCGAAATAGTTTAGGTGAGCAACAAGTAGATTTTATTAATTGTGTTGTAT
GGAGAAGGTCGGCTGAAAATGTAACAGAATATTGTACGAAAGGCTCACTTGTTGGGATTACAGGGCGTATTCATACGAGT
AATTACGATGATGAACAAGGAAAGAGAGTATATAGAACTGAAGTTCTGATTGAGAATATTACATTTTTAGAGAGAAGGCG
GGAGAGTGCATCGCAAAAATATTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8N3J7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

92.982

0.535
  ssb Latilactobacillus sakei subsp. sakei 23K

49.587

100

0.526
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.442

99.123

0.5
  ssbB Lactococcus lactis subsp. cremoris KW2

43.86

100

0.439
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.727

96.491

0.412
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.727

96.491

0.412
  ssbB/cilA Streptococcus pneumoniae D39

41.818

96.491

0.404
  ssbB/cilA Streptococcus pneumoniae Rx1

41.818

96.491

0.404
  ssbB/cilA Streptococcus pneumoniae R6

41.818

96.491

0.404
  ssbB/cilA Streptococcus mitis SK321

41.818

96.491

0.404
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

96.491

0.395
  ssbA Streptococcus mutans UA159

40.909

96.491

0.395