Detailed information
Bioinformatically predicted
Overview
| Name | comYC | Type | Machinery gene |
| Locus tag | KE3_RS00245 | Genome accession | NC_021900 |
| Coordinates | 49849..50142 (+) | Length | 97 a.a. |
| NCBI ID | WP_020915989.1 | Uniprot ID | - |
| Organism | Streptococcus lutetiensis 033 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 44849..55142
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KE3_RS00230 (KE3_0048) | - | 47501..47869 (+) | 369 | WP_020915986.1 | DUF1033 family protein | - |
| KE3_RS00235 (KE3_0049) | comYA | 47941..48882 (+) | 942 | WP_020915987.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| KE3_RS00240 (KE3_0050) | comYB | 48806..49849 (+) | 1044 | WP_020915988.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| KE3_RS00245 (KE3_0051) | comYC | 49849..50142 (+) | 294 | WP_020915989.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| KE3_RS00250 (KE3_0052) | comYD | 50126..50557 (+) | 432 | WP_020915990.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| KE3_RS00255 (KE3_0053) | comYE | 50511..50804 (+) | 294 | WP_020915991.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| KE3_RS00260 (KE3_0054) | comYF | 50788..51225 (+) | 438 | WP_043894883.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| KE3_RS00265 (KE3_0055) | comGG | 51197..51547 (+) | 351 | WP_020915993.1 | competence type IV pilus minor pilin ComGG | - |
| KE3_RS00270 (KE3_0056) | comYH | 51601..52557 (+) | 957 | WP_020915994.1 | class I SAM-dependent methyltransferase | Machinery gene |
| KE3_RS00275 (KE3_0057) | - | 52611..53810 (+) | 1200 | WP_020915995.1 | acetate kinase | - |
| KE3_RS00280 (KE3_0058) | - | 53970..54167 (+) | 198 | WP_020915996.1 | helix-turn-helix transcriptional regulator | - |
| KE3_RS00285 (KE3_0059) | - | 54184..54384 (+) | 201 | WP_020915997.1 | hypothetical protein | - |
| KE3_RS00290 (KE3_0060) | - | 54385..54840 (+) | 456 | WP_020915998.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 97 a.a. Molecular weight: 11018.16 Da Isoelectric Point: 10.1006
>NTDB_id=60798 KE3_RS00245 WP_020915989.1 49849..50142(+) (comYC) [Streptococcus lutetiensis 033]
MKNIWKKLRKKSVEAFTLVEMLIVLLIIGVLMLLFVPNLSKQKEVVHEKGDAAVVKVVESQMELYEVKTGKQPTVNDLVK
AEYISKDQAQTYNAAKK
MKNIWKKLRKKSVEAFTLVEMLIVLLIIGVLMLLFVPNLSKQKEVVHEKGDAAVVKVVESQMELYEVKTGKQPTVNDLVK
AEYISKDQAQTYNAAKK
Nucleotide
Download Length: 294 bp
>NTDB_id=60798 KE3_RS00245 WP_020915989.1 49849..50142(+) (comYC) [Streptococcus lutetiensis 033]
ATGAAAAACATTTGGAAAAAACTACGTAAAAAGTCTGTAGAAGCTTTTACACTTGTGGAGATGTTGATTGTTTTGCTAAT
CATTGGTGTCTTGATGCTGTTATTTGTGCCAAACTTGAGCAAGCAAAAAGAGGTTGTGCATGAAAAAGGAGATGCTGCTG
TTGTCAAAGTTGTCGAAAGTCAGATGGAGCTTTATGAAGTGAAGACAGGTAAACAACCAACTGTAAATGATTTGGTGAAA
GCTGAATATATTTCAAAAGACCAAGCTCAAACATATAATGCGGCTAAAAAATAA
ATGAAAAACATTTGGAAAAAACTACGTAAAAAGTCTGTAGAAGCTTTTACACTTGTGGAGATGTTGATTGTTTTGCTAAT
CATTGGTGTCTTGATGCTGTTATTTGTGCCAAACTTGAGCAAGCAAAAAGAGGTTGTGCATGAAAAAGGAGATGCTGCTG
TTGTCAAAGTTGTCGAAAGTCAGATGGAGCTTTATGAAGTGAAGACAGGTAAACAACCAACTGTAAATGATTTGGTGAAA
GCTGAATATATTTCAAAAGACCAAGCTCAAACATATAATGCGGCTAAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
68.539 |
91.753 |
0.629 |
| comYC | Streptococcus suis isolate S10 |
60.87 |
94.845 |
0.577 |
| comGC/cglC | Streptococcus mitis SK321 |
56.989 |
95.876 |
0.546 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
56.522 |
94.845 |
0.536 |
| comGC/cglC | Streptococcus pneumoniae D39 |
56.522 |
94.845 |
0.536 |
| comGC/cglC | Streptococcus pneumoniae R6 |
56.522 |
94.845 |
0.536 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
56.522 |
94.845 |
0.536 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
56.522 |
94.845 |
0.536 |
| comYC | Streptococcus mutans UA140 |
56.322 |
89.691 |
0.505 |
| comYC | Streptococcus mutans UA159 |
56.322 |
89.691 |
0.505 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
51.685 |
91.753 |
0.474 |
| comGC | Latilactobacillus sakei subsp. sakei 23K |
45.57 |
81.443 |
0.371 |