Detailed information NTG0060801

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: KE3_RS00260
• Genome accession: NC_021900
• Coordinates: 50788..51225 (+)
• Length: 145 a.a.
• NCBI ID: WP_043894883.1
• Uniprot ID: -
• Organism: Streptococcus lutetiensis 033
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 45788..56225

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KE3_RS00230 (KE3_0048)	-	47501..47869 (+)	369	WP_020915986.1	DUF1033 family protein	-
KE3_RS00235 (KE3_0049)	comYA	47941..48882 (+)	942	WP_020915987.1	competence type IV pilus ATPase ComGA	Machinery gene
KE3_RS00240 (KE3_0050)	comYB	48806..49849 (+)	1044	WP_020915988.1	competence type IV pilus assembly protein ComGB	Machinery gene
KE3_RS00245 (KE3_0051)	comYC	49849..50142 (+)	294	WP_020915989.1	competence type IV pilus major pilin ComGC	Machinery gene
KE3_RS00250 (KE3_0052)	comYD	50126..50557 (+)	432	WP_020915990.1	competence type IV pilus minor pilin ComGD	Machinery gene
KE3_RS00255 (KE3_0053)	comYE	50511..50804 (+)	294	WP_020915991.1	competence type IV pilus minor pilin ComGE	Machinery gene
KE3_RS00260 (KE3_0054)	comYF	50788..51225 (+)	438	WP_043894883.1	competence type IV pilus minor pilin ComGF	Machinery gene
KE3_RS00265 (KE3_0055)	comGG	51197..51547 (+)	351	WP_020915993.1	competence type IV pilus minor pilin ComGG	-
KE3_RS00270 (KE3_0056)	comYH	51601..52557 (+)	957	WP_020915994.1	class I SAM-dependent methyltransferase	Machinery gene
KE3_RS00275 (KE3_0057)	-	52611..53810 (+)	1200	WP_020915995.1	acetate kinase	-
KE3_RS00280 (KE3_0058)	-	53970..54167 (+)	198	WP_020915996.1	helix-turn-helix transcriptional regulator	-
KE3_RS00285 (KE3_0059)	-	54184..54384 (+)	201	WP_020915997.1	hypothetical protein	-
KE3_RS00290 (KE3_0060)	-	54385..54840 (+)	456	WP_020915998.1	hypothetical protein	-
KE3_RS00295 (KE3_0061)	-	54855..55490 (+)	636	WP_043894885.1	CPBP family intramembrane glutamic endopeptidase	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16159.52 Da
• Isoelectric Point: 9.8332

>NTDB_id=60801 KE3_RS00260 WP_043894883.1 50788..51225(+) (comYF) [Streptococcus lutetiensis 033]
MSRKIRLRAFTLLESLVALLVISGSILVYQGLTQSISSNVHYLSANQEEKWLLFSQQLRSELAGCQLNKVADNKLYVSKG
NQQLAYGLSKADDFRKTNASGQGYQPMFFGVTSSSISQDGNKVIIKLQLGSDMERCFVYTFKTTS

Nucleotide

• Length: 438 bp

>NTDB_id=60801 KE3_RS00260 WP_043894883.1 50788..51225(+) (comYF) [Streptococcus lutetiensis 033]
ATGTCACGAAAAATTAGATTAAGAGCTTTTACCCTTTTAGAAAGTTTGGTAGCTTTGCTGGTTATCTCAGGTTCCATATT
GGTTTATCAAGGATTGACCCAAAGCATTTCAAGCAATGTCCATTATTTATCGGCGAATCAAGAGGAAAAATGGTTGCTCT
TTTCTCAGCAGCTGCGTTCTGAGCTTGCTGGTTGTCAGTTGAATAAAGTTGCTGACAACAAACTCTATGTTAGTAAAGGT
AATCAGCAATTGGCTTATGGCTTGTCTAAGGCTGATGATTTTCGAAAAACAAATGCCTCAGGTCAGGGTTATCAACCCAT
GTTCTTTGGCGTGACGTCATCTAGCATCAGTCAGGATGGCAATAAGGTGATAATTAAACTGCAATTAGGCAGTGATATGG
AGAGATGTTTTGTTTACACTTTTAAGACGACAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-129)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.696	95.172	0.559
comYF	Streptococcus mutans UA159	57.971	95.172	0.552
comGF/cglF	Streptococcus pneumoniae Rx1	45.652	95.172	0.434
comGF/cglF	Streptococcus pneumoniae D39	45.652	95.172	0.434
comGF/cglF	Streptococcus pneumoniae R6	45.652	95.172	0.434
comGF/cglF	Streptococcus pneumoniae TIGR4	45.652	95.172	0.434
comGF	Lactococcus lactis subsp. cremoris KW2	43.972	97.241	0.428
comGF/cglF	Streptococcus mitis NCTC 12261	43.885	95.862	0.421
comGF/cglF	Streptococcus mitis SK321	43.165	95.862	0.414