Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   K8O89_RS01415 Genome accession   NZ_CP082852
Coordinates   309587..310018 (+) Length   143 a.a.
NCBI ID   WP_019231982.1    Uniprot ID   A0AAX0WT13
Organism   Legionella anisa strain FDAARGOS_1480     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 304587..315018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O89_RS01405 (K8O89_01405) letS 305002..307740 (+) 2739 WP_156415157.1 two-component system sensor histidine kinase LetS Regulator
  K8O89_RS01410 (K8O89_01410) - 307936..309174 (+) 1239 WP_019231983.1 6-phosphofructokinase -
  K8O89_RS01415 (K8O89_01415) pilA 309587..310018 (+) 432 WP_019231982.1 pilin Machinery gene
  K8O89_RS01420 (K8O89_01420) - 310090..310419 (+) 330 WP_019231981.1 BolA family transcriptional regulator -
  K8O89_RS01425 (K8O89_01425) - 310801..312201 (+) 1401 WP_019231980.1 APC family permease -
  K8O89_RS01430 (K8O89_01430) - 312298..312477 (-) 180 WP_019231979.1 Trm112 family protein -
  K8O89_RS01435 (K8O89_01435) tsaB 312495..313145 (-) 651 WP_019231978.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 14689.89 Da        Isoelectric Point: 8.4860

>NTDB_id=603038 K8O89_RS01415 WP_019231982.1 309587..310018(+) (pilA) [Legionella anisa strain FDAARGOS_1480]
MKQKGFTLIELMIVVAIVGILAAIAIPAYQDYVVRARVTEGLSVASSAKTTVSENATTGNADLSQGWSFANPTANVQSVV
VTAATGVITITYTALAQNVVITLTPQANGAALVAGTPPTAPITWACAVNNAGNNRYVPANCRI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=603038 K8O89_RS01415 WP_019231982.1 309587..310018(+) (pilA) [Legionella anisa strain FDAARGOS_1480]
ATGAAACAAAAAGGTTTTACTTTAATTGAATTAATGATAGTGGTAGCAATAGTTGGTATTCTTGCCGCAATTGCTATCCC
GGCATATCAGGATTACGTCGTCAGAGCCCGCGTTACAGAAGGGTTAAGTGTTGCTTCTTCTGCAAAGACAACTGTCTCTG
AAAATGCAACAACAGGTAATGCAGACTTAAGTCAGGGCTGGAGTTTTGCAAACCCTACTGCTAATGTGCAAAGTGTTGTT
GTTACTGCCGCTACGGGTGTAATCACAATTACTTATACAGCACTTGCACAAAACGTAGTTATTACTTTAACGCCACAAGC
TAACGGGGCTGCCCTTGTTGCTGGAACACCACCAACTGCGCCAATTACCTGGGCTTGTGCTGTAAATAATGCTGGTAACA
ACCGATACGTACCTGCCAACTGCAGAATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)

Pilin (bacterial filament) (Pilin)

(34-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

52.532

100

0.58
  pilA2 Legionella pneumophila strain ERS1305867

54.73

100

0.566
  pilA2 Legionella pneumophila str. Paris

54.054

100

0.559
  comP Acinetobacter baylyi ADP1

47.097

100

0.51
  pilE Neisseria gonorrhoeae strain FA1090

36.364

100

0.42
  pilA/pilA1 Eikenella corrodens VA1

37.5

100

0.42
  pilE Neisseria gonorrhoeae MS11

35.329

100

0.413
  pilA Pseudomonas aeruginosa PAK

36.364

100

0.392
  pilA/pilAI Pseudomonas stutzeri DSM 10701

35.811

100

0.371
  pilA/pilAII Pseudomonas stutzeri DSM 10701

37.063

100

0.371