Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NIY03_RS01585 Genome accession   NZ_CP099855
Coordinates   337290..337754 (+) Length   154 a.a.
NCBI ID   WP_000993723.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 17978R     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332290..342754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY03_RS01565 (NIY03_01565) - 333682..334569 (+) 888 WP_001017325.1 metal-dependent hydrolase -
  NIY03_RS01570 (NIY03_01570) - 334700..335290 (+) 591 WP_000846931.1 LemA family protein -
  NIY03_RS01575 (NIY03_01575) - 335312..336394 (+) 1083 WP_001246375.1 TPM domain-containing protein -
  NIY03_RS01580 (NIY03_01580) - 336388..336948 (+) 561 WP_000258957.1 TPM domain-containing protein -
  NIY03_RS01585 (NIY03_01585) pilA 337290..337754 (+) 465 WP_000993723.1 pilin Machinery gene
  NIY03_RS01590 (NIY03_01590) - 337904..339532 (+) 1629 WP_025467430.1 O-antigen ligase family protein -
  NIY03_RS01595 (NIY03_01595) bfr 339576..340040 (-) 465 WP_000678124.1 bacterioferritin -
  NIY03_RS01600 (NIY03_01600) - 340285..340479 (-) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  NIY03_RS01605 (NIY03_01605) - 340689..341072 (-) 384 WP_000090000.1 RidA family protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 15445.69 Da        Isoelectric Point: 8.1130

>NTDB_id=603010 NIY03_RS01585 WP_000993723.1 337290..337754(+) (pilA) [Acinetobacter baumannii strain 17978R]
MNAQKGFTLIELMIVVAIIGILAAIAIPQYQKYTARSQITAALAEISPGKTQFELALSEGTANSVNNNPAAIGLKSTTNN
CSAVNVTANGTTGTIACTLQGSATITGGVLTLTRSADVAAASGVNANVGGWTCSITKGTTDISSVIAPKGCTII

Nucleotide


Download         Length: 465 bp        

>NTDB_id=603010 NIY03_RS01585 WP_000993723.1 337290..337754(+) (pilA) [Acinetobacter baumannii strain 17978R]
ATGAATGCACAAAAAGGTTTTACATTAATTGAACTCATGATCGTGGTTGCCATTATCGGTATTTTGGCAGCAATTGCGAT
TCCGCAATATCAGAAATACACTGCTCGTTCTCAAATTACAGCAGCATTGGCGGAAATCAGCCCAGGGAAAACTCAATTTG
AACTAGCTCTATCCGAAGGTACAGCTAACAGTGTGAATAATAACCCCGCAGCAATTGGTTTAAAAAGTACTACTAATAAT
TGTTCTGCTGTTAATGTAACTGCAAATGGAACTACTGGTACTATTGCATGTACGTTACAAGGCTCTGCTACAATTACTGG
TGGTGTTCTAACTTTAACACGTAGTGCAGATGTAGCAGCTGCTTCTGGAGTAAATGCAAATGTGGGTGGCTGGACATGTT
CTATTACTAAAGGAACAACAGATATTTCTTCAGTAATTGCTCCAAAAGGCTGTACAATAATTTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(35-152)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter baumannii strain A118

46.154

100

0.468
  pilA Pseudomonas aeruginosa PAK

42.073

100

0.448
  pilA Vibrio cholerae strain A1552

44.156

100

0.442
  pilA Vibrio cholerae C6706

44.156

100

0.442
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

44.156

100

0.442
  pilA/pilAII Pseudomonas stutzeri DSM 10701

45.333

97.403

0.442
  pilA/pilAI Pseudomonas stutzeri DSM 10701

48.529

88.312

0.429
  pilA Vibrio parahaemolyticus RIMD 2210633

39.333

97.403

0.383
  pilA Ralstonia pseudosolanacearum GMI1000

39.333

97.403

0.383
  pilA2 Legionella pneumophila str. Paris

42.963

87.662

0.377
  pilA2 Legionella pneumophila strain ERS1305867

42.963

87.662

0.377