Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K6751_RS05550 Genome accession   NZ_CP082244
Coordinates   1175369..1176589 (-) Length   406 a.a.
NCBI ID   WP_222901094.1    Uniprot ID   -
Organism   Metapseudomonas otitidis strain CSMC7.1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1170369..1181589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6751_RS05505 (K6751_05505) - 1170775..1170948 (-) 174 WP_044406847.1 DUF3094 family protein -
  K6751_RS05510 (K6751_05510) - 1171028..1171654 (-) 627 WP_044406964.1 DUF1780 domain-containing protein -
  K6751_RS05515 (K6751_05515) - 1171774..1172199 (+) 426 WP_222901090.1 GNAT family N-acetyltransferase -
  K6751_RS05520 (K6751_05520) - 1172196..1172672 (+) 477 WP_052807598.1 hypothetical protein -
  K6751_RS05525 (K6751_05525) - 1172669..1173355 (+) 687 WP_142011982.1 energy-coupling factor ABC transporter permease -
  K6751_RS05530 (K6751_05530) - 1173466..1173681 (+) 216 WP_222901091.1 hypothetical protein -
  K6751_RS05535 (K6751_05535) yacG 1173694..1173891 (-) 198 WP_044406857.1 DNA gyrase inhibitor YacG -
  K6751_RS05540 (K6751_05540) coaE 1173888..1174499 (-) 612 WP_222901092.1 dephospho-CoA kinase -
  K6751_RS05545 (K6751_05545) pilD 1174496..1175368 (-) 873 WP_222901093.1 prepilin peptidase Machinery gene
  K6751_RS05550 (K6751_05550) pilC 1175369..1176589 (-) 1221 WP_222901094.1 type II secretion system F family protein Machinery gene
  K6751_RS05555 (K6751_05555) pilB 1176593..1178296 (-) 1704 WP_222901095.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K6751_RS05560 (K6751_05560) pilA 1178392..1178805 (-) 414 WP_222901096.1 pilin Machinery gene
  K6751_RS05565 (K6751_05565) - 1179067..1180668 (+) 1602 WP_222901097.1 PglL family O-oligosaccharyltransferase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44428.33 Da        Isoelectric Point: 9.9758

>NTDB_id=600500 K6751_RS05550 WP_222901094.1 1175369..1176589(-) (pilC) [Metapseudomonas otitidis strain CSMC7.1]
MAEKILKTTLFSWEGTDKKGAKVKGDMSGANPALVKAQLRKQGINPTKVRKKGTSLFSKGKKIKPLDIALFTRQMATMMK
AGVPLLQSFDIIGEGVDNQNMRKLVEEVKQEVAAGNSFANSLRKKPLYFDELYCNLVDSGEQSGALENLLDRVATYKEKT
ESLKAKIKKAMTYPIAVIIVALIVSAILLIKVVPQFQSVFSGFGAELPAFTMMVIHLSEFLQTWWFVVLLGMFGAVFSIR
ELHRRSKKFRDNVDRGVLKLPIVGDILYKSAVARYARTLSTTFAAGVPLVDALDSVSGATGNVVFKEAVNKIKQDVSTGM
QLNFSMRTTGVFPSMAIQMTAIGEESGALDIMLDKVASFYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=600500 K6751_RS05550 WP_222901094.1 1175369..1176589(-) (pilC) [Metapseudomonas otitidis strain CSMC7.1]
ATGGCGGAAAAAATTCTCAAAACCACCCTATTCAGTTGGGAAGGTACAGACAAAAAAGGCGCCAAGGTCAAAGGGGACAT
GAGCGGTGCCAACCCCGCTCTTGTGAAGGCCCAATTGCGTAAGCAAGGCATCAACCCCACCAAAGTCAGGAAGAAAGGCA
CGTCGCTTTTCAGCAAGGGGAAGAAGATCAAGCCCCTTGATATAGCTCTGTTCACTCGCCAGATGGCCACCATGATGAAA
GCAGGCGTTCCGCTGCTTCAAAGCTTCGACATCATTGGAGAGGGCGTCGATAACCAGAACATGCGAAAGCTGGTCGAAGA
AGTGAAGCAAGAGGTAGCCGCAGGAAACAGCTTTGCAAACTCTCTTAGAAAAAAGCCTCTCTACTTTGACGAGCTCTACT
GCAACTTGGTCGACTCAGGCGAACAATCCGGCGCATTGGAAAATCTGTTGGATCGCGTGGCAACTTACAAAGAGAAAACC
GAGTCACTCAAGGCAAAGATCAAGAAGGCGATGACCTACCCAATCGCCGTGATCATAGTCGCCTTGATAGTTTCTGCAAT
TCTACTGATTAAAGTTGTACCTCAATTCCAATCCGTCTTTTCGGGATTCGGCGCCGAACTTCCTGCATTCACCATGATGG
TCATTCACCTTTCCGAGTTTCTTCAAACCTGGTGGTTTGTCGTGTTGCTGGGAATGTTCGGGGCCGTTTTTAGCATCCGC
GAGCTACACCGCCGCTCCAAAAAATTCAGGGATAATGTTGATAGAGGTGTACTTAAACTCCCCATCGTAGGCGACATCCT
GTACAAATCCGCCGTAGCACGTTACGCCCGCACGTTGTCCACCACCTTTGCAGCGGGCGTACCGTTAGTTGATGCTCTCG
ACTCCGTCTCTGGCGCAACCGGCAATGTGGTTTTCAAAGAGGCTGTAAACAAAATCAAGCAGGATGTCTCCACTGGCATG
CAGCTCAATTTCTCCATGCGAACCACCGGCGTGTTCCCCTCCATGGCCATCCAGATGACAGCCATTGGTGAAGAGTCCGG
CGCATTGGACATCATGCTCGACAAGGTCGCCTCTTTTTACGAGGAAGAAGTCGATAACGCAGTGGACAATCTGACTACCC
TGATGGAGCCGATGATCATGGCGGTTCTGGGCGTACTGGTCGGCGGCCTTATCATCGCGATGTACCTCCCCATCTTCCAG
CTCGGCTCGGTAGTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

80

99.754

0.798
  pilC Acinetobacter baylyi ADP1

60.345

100

0.603
  pilC Acinetobacter baumannii D1279779

59.95

97.783

0.586
  pilC Legionella pneumophila strain ERS1305867

56.061

97.537

0.547
  pilG Neisseria gonorrhoeae MS11

44.5

98.522

0.438
  pilG Neisseria meningitidis 44/76-A

44.389

98.768

0.438
  pilC Vibrio cholerae strain A1552

42.317

97.783

0.414
  pilC Vibrio campbellii strain DS40M4

42.065

97.783

0.411
  pilC Thermus thermophilus HB27

37.157

98.768

0.367