Detailed information NTG0600499

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: K6751_RS05545
• Genome accession: NZ_CP082244
• Coordinates: 1174496..1175368 (-)
• Length: 290 a.a.
• NCBI ID: WP_222901093.1
• Uniprot ID: -
• Organism: Metapseudomonas otitidis strain CSMC7.1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1169496..1180368

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6751_RS05505 (K6751_05505)	-	1170775..1170948 (-)	174	WP_044406847.1	DUF3094 family protein	-
K6751_RS05510 (K6751_05510)	-	1171028..1171654 (-)	627	WP_044406964.1	DUF1780 domain-containing protein	-
K6751_RS05515 (K6751_05515)	-	1171774..1172199 (+)	426	WP_222901090.1	GNAT family N-acetyltransferase	-
K6751_RS05520 (K6751_05520)	-	1172196..1172672 (+)	477	WP_052807598.1	hypothetical protein	-
K6751_RS05525 (K6751_05525)	-	1172669..1173355 (+)	687	WP_142011982.1	energy-coupling factor ABC transporter permease	-
K6751_RS05530 (K6751_05530)	-	1173466..1173681 (+)	216	WP_222901091.1	hypothetical protein	-
K6751_RS05535 (K6751_05535)	yacG	1173694..1173891 (-)	198	WP_044406857.1	DNA gyrase inhibitor YacG	-
K6751_RS05540 (K6751_05540)	coaE	1173888..1174499 (-)	612	WP_222901092.1	dephospho-CoA kinase	-
K6751_RS05545 (K6751_05545)	pilD	1174496..1175368 (-)	873	WP_222901093.1	prepilin peptidase	Machinery gene
K6751_RS05550 (K6751_05550)	pilC	1175369..1176589 (-)	1221	WP_222901094.1	type II secretion system F family protein	Machinery gene
K6751_RS05555 (K6751_05555)	pilB	1176593..1178296 (-)	1704	WP_222901095.1	type IV-A pilus assembly ATPase PilB	Machinery gene
K6751_RS05560 (K6751_05560)	pilA	1178392..1178805 (-)	414	WP_222901096.1	pilin	Machinery gene

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31917.91 Da
• Isoelectric Point: 6.4671

>NTDB_id=600499 K6751_RS05545 WP_222901093.1 1174496..1175368(-) (pilD) [Metapseudomonas otitidis strain CSMC7.1]
MTVLDFLAGNLPAFVFCVFLLGLLVGSFLNVVIYRLPVMMFRDWKVQAREALELQPEPPGETFNLVLPNSRCPHCQHEIK
AWENIPVVSWLALGGKCSSCKAPIKKRYPLVELACGLLSAYVAWHFGFTWQAGAFLVLTWGLLAMSMIDIDHQLLPDSLV
LPLLWLGLIVNSQGLFTGLEDALWGAVGGYLSLWSVYWVFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AVLGIIILKLRDADSGTPIPFGPYLAIAGWIALLWGDQITGTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=600499 K6751_RS05545 WP_222901093.1 1174496..1175368(-) (pilD) [Metapseudomonas otitidis strain CSMC7.1]
GTGACCGTTCTCGACTTCCTGGCCGGCAACTTGCCGGCCTTTGTTTTCTGCGTATTTCTCCTCGGCCTCTTGGTCGGCAG
TTTCCTCAACGTGGTCATTTACCGCTTGCCGGTGATGATGTTCCGCGACTGGAAAGTCCAAGCCCGCGAGGCCCTGGAGT
TACAGCCGGAGCCGCCGGGCGAGACGTTCAACCTGGTTCTGCCGAACTCCCGTTGCCCCCATTGCCAGCACGAGATCAAG
GCCTGGGAGAACATCCCGGTGGTGAGTTGGCTGGCCCTGGGCGGCAAGTGTTCGTCGTGCAAGGCACCGATCAAGAAGCG
CTACCCGCTGGTGGAACTGGCCTGCGGGCTGCTTTCCGCCTACGTCGCCTGGCACTTCGGTTTCACCTGGCAGGCGGGCG
CCTTCCTGGTGCTGACCTGGGGTTTGCTGGCGATGAGCATGATCGACATCGACCACCAGCTGCTCCCCGACTCCCTGGTG
CTGCCGCTGCTCTGGCTCGGGCTGATCGTCAACAGCCAGGGGCTGTTCACCGGGCTGGAGGATGCCCTTTGGGGCGCGGT
AGGCGGCTACCTGAGCCTGTGGAGCGTGTACTGGGTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGCTATGGCGACT
TCAAGCTGCTGGCCATGCTCGGCGCCTGGGGTGGCTGGCAGGTGCTTCCGCTGACCATCCTGCTGTCGTCTCTGGTCGGC
GCGGTACTGGGGATCATCATCCTCAAGCTGCGCGATGCCGACAGCGGCACGCCCATTCCCTTCGGCCCCTACCTGGCAAT
TGCCGGCTGGATCGCATTGCTCTGGGGTGATCAAATAACCGGGACCTATCTGCAGTTCGCCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	52.632	98.276	0.517
pilD	Vibrio cholerae strain A1552	55.431	92.069	0.51
pilD	Acinetobacter nosocomialis M2	51.93	98.276	0.51
pilD	Vibrio campbellii strain DS40M4	53.114	94.138	0.5
pilD	Neisseria gonorrhoeae MS11	51.724	90	0.466