Detailed information
Bioinformatically predicted
Overview
| Name | comYC | Type | Machinery gene |
| Locus tag | K5P74_RS03970 | Genome accession | NZ_CP081846 |
| Coordinates | 804225..804494 (+) | Length | 89 a.a. |
| NCBI ID | WP_010746556.1 | Uniprot ID | A0AAW8TC89 |
| Organism | Enterococcus raffinosus strain CX012922 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 799225..809494
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5P74_RS03945 (K5P74_03945) | dat | 799560..800429 (+) | 870 | WP_222226562.1 | D-amino-acid transaminase | - |
| K5P74_RS03950 (K5P74_03950) | - | 800519..801301 (+) | 783 | WP_010746560.1 | phosphotransferase family protein | - |
| K5P74_RS03955 (K5P74_03955) | trmB | 801560..802210 (+) | 651 | WP_222226563.1 | tRNA (guanosine(46)-N7)-methyltransferase TrmB | - |
| K5P74_RS03960 (K5P74_03960) | comGA | 802304..803236 (+) | 933 | WP_222226564.1 | competence type IV pilus ATPase ComGA | - |
| K5P74_RS03965 (K5P74_03965) | comGB | 803215..804228 (+) | 1014 | WP_222226565.1 | competence type IV pilus assembly protein ComGB | - |
| K5P74_RS03970 (K5P74_03970) | comYC | 804225..804494 (+) | 270 | WP_010746556.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| K5P74_RS03975 (K5P74_03975) | comGD | 804466..804933 (+) | 468 | WP_222226567.1 | competence type IV pilus minor pilin ComGD | - |
| K5P74_RS03980 (K5P74_03980) | comGE | 804911..805192 (+) | 282 | WP_261321735.1 | competence type IV pilus minor pilin ComGE | - |
| K5P74_RS03985 (K5P74_03985) | comGF | 805179..805601 (+) | 423 | WP_222226569.1 | competence type IV pilus minor pilin ComGF | - |
| K5P74_RS03990 (K5P74_03990) | comGG | 805564..805914 (+) | 351 | WP_261321736.1 | competence type IV pilus minor pilin ComGG | - |
| K5P74_RS03995 (K5P74_03995) | - | 806081..807088 (+) | 1008 | WP_010746551.1 | class I SAM-dependent methyltransferase | - |
| K5P74_RS04000 (K5P74_04000) | - | 807137..808333 (+) | 1197 | WP_010746550.1 | acetate kinase | - |
| K5P74_RS04005 (K5P74_04005) | - | 808478..808828 (+) | 351 | WP_010746549.1 | BMC domain-containing protein | - |
| K5P74_RS04010 (K5P74_04010) | - | 808832..809272 (+) | 441 | WP_218256914.1 | EutP/PduV family microcompartment system protein | - |
Sequence
Protein
Download Length: 89 a.a. Molecular weight: 10213.99 Da Isoelectric Point: 8.4367
>NTDB_id=597702 K5P74_RS03970 WP_010746556.1 804225..804494(+) (comYC) [Enterococcus raffinosus strain CX012922]
MKKKVSGFTLIEMLVVLFVISLLLLLFVPKLINQKDSATKKSDAAIAKVVETQIEVFELDHGRTPSKQELIDQGYVKEKQ
YEAYERNKE
MKKKVSGFTLIEMLVVLFVISLLLLLFVPKLINQKDSATKKSDAAIAKVVETQIEVFELDHGRTPSKQELIDQGYVKEKQ
YEAYERNKE
Nucleotide
Download Length: 270 bp
>NTDB_id=597702 K5P74_RS03970 WP_010746556.1 804225..804494(+) (comYC) [Enterococcus raffinosus strain CX012922]
GTGAAGAAAAAAGTTTCTGGCTTTACATTAATAGAAATGCTAGTTGTTCTTTTCGTAATCAGCTTACTATTACTGCTTTT
TGTACCAAAGCTGATCAATCAAAAAGACAGTGCCACAAAGAAAAGTGATGCGGCTATTGCAAAAGTTGTCGAAACTCAGA
TTGAGGTTTTTGAGTTGGATCATGGTAGAACACCGAGCAAACAAGAATTAATTGATCAGGGCTATGTTAAGGAGAAGCAA
TATGAAGCCTATGAACGCAATAAAGAATAG
GTGAAGAAAAAAGTTTCTGGCTTTACATTAATAGAAATGCTAGTTGTTCTTTTCGTAATCAGCTTACTATTACTGCTTTT
TGTACCAAAGCTGATCAATCAAAAAGACAGTGCCACAAAGAAAAGTGATGCGGCTATTGCAAAAGTTGTCGAAACTCAGA
TTGAGGTTTTTGAGTTGGATCATGGTAGAACACCGAGCAAACAAGAATTAATTGATCAGGGCTATGTTAAGGAGAAGCAA
TATGAAGCCTATGAACGCAATAAAGAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYC | Streptococcus suis isolate S10 |
56.471 |
95.506 |
0.539 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
49.412 |
95.506 |
0.472 |
| comGC/cglC | Streptococcus mitis SK321 |
50.602 |
93.258 |
0.472 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
50.602 |
93.258 |
0.472 |
| comGC/cglC | Streptococcus pneumoniae R6 |
47.619 |
94.382 |
0.449 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
47.619 |
94.382 |
0.449 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
47.619 |
94.382 |
0.449 |
| comGC/cglC | Streptococcus pneumoniae D39 |
47.619 |
94.382 |
0.449 |
| comGC | Latilactobacillus sakei subsp. sakei 23K |
43.82 |
100 |
0.438 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
44.706 |
95.506 |
0.427 |
| comYC | Streptococcus mutans UA140 |
45.679 |
91.011 |
0.416 |
| comYC | Streptococcus mutans UA159 |
45.679 |
91.011 |
0.416 |
| comGC | Staphylococcus aureus N315 |
45.57 |
88.764 |
0.404 |
| comGC | Staphylococcus aureus MW2 |
45.57 |
88.764 |
0.404 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
47.222 |
80.899 |
0.382 |