Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AW27_RS21365 Genome accession   NZ_CP097800
Coordinates   4846077..4847120 (+) Length   347 a.a.
NCBI ID   WP_037923482.1    Uniprot ID   -
Organism   Streptomyces sp. PCS3-D2 isolate P1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4841077..4852120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW27_RS21345 (AW27_021315) - 4841387..4842802 (-) 1416 WP_078556640.1 GH1 family beta-glucosidase -
  AW27_RS21350 (AW27_021320) - 4842799..4843623 (-) 825 WP_078556642.1 carbohydrate ABC transporter permease -
  AW27_RS21355 (AW27_021325) - 4843620..4844615 (-) 996 WP_037923476.1 carbohydrate ABC transporter permease -
  AW27_RS21360 (AW27_021330) - 4844623..4845972 (-) 1350 WP_037923479.1 ABC transporter substrate-binding protein -
  AW27_RS21365 (AW27_021335) cytR 4846077..4847120 (+) 1044 WP_037923482.1 LacI family DNA-binding transcriptional regulator Regulator
  AW27_RS21375 (AW27_021345) orn 4847392..4847994 (-) 603 WP_037923485.1 oligoribonuclease -
  AW27_RS21380 (AW27_021350) - 4848119..4849291 (-) 1173 WP_037923488.1 helix-turn-helix domain-containing protein -
  AW27_RS21385 (AW27_021355) - 4849668..4850093 (-) 426 WP_078556644.1 hypothetical protein -
  AW27_RS21390 (AW27_021360) - 4850416..4850949 (+) 534 WP_037923491.1 universal stress protein -
  AW27_RS21395 (AW27_021365) - 4851048..4851617 (+) 570 WP_037923494.1 GPR1/FUN34/YaaH family transporter -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 36743.74 Da        Isoelectric Point: 7.9279

>NTDB_id=596533 AW27_RS21365 WP_037923482.1 4846077..4847120(+) (cytR) [Streptomyces sp. PCS3-D2 isolate P1]
MNGNGRSGGRPTLEEVAVRAGVGRGTVSRVINGSSRVSEQTRAAVEAAVTELGYVPNRAARALAANRNDAIALVIPEPEA
RFFAEPYFSEVVRGVGAALAETDIQLVLTLAGSDRERRRLAQYLSGHRVDGVLLVSVHAGDPLPELLVELGIPTVISGRR
SAAETLPCVDSDNLAGAAEAVRHLLDRGRRTIATITGPLDVYGARCRLDGYRQALAAAGRPVDERLVAVADFTEEGGRRA
MRELLERSPSLDAVFASSDVMAAGARRELRAAGRRIPHDVALVGFDDSVVARHMDPPLTSVRQPIEEMGRTMASMLLDRV
SGRGGSAVAAGGPAVVLPNRLVVRESS

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=596533 AW27_RS21365 WP_037923482.1 4846077..4847120(+) (cytR) [Streptomyces sp. PCS3-D2 isolate P1]
ATGAACGGGAACGGGCGCAGCGGGGGACGGCCGACCCTGGAAGAGGTCGCGGTGCGCGCCGGAGTCGGGCGCGGCACCGT
GTCCCGGGTGATCAACGGGTCCTCCAGGGTCAGCGAGCAGACCAGGGCCGCCGTCGAGGCGGCCGTGACCGAGCTGGGGT
ACGTGCCGAACCGCGCGGCCCGCGCCCTCGCGGCCAACCGCAACGACGCGATCGCCCTCGTGATCCCCGAGCCCGAGGCC
CGGTTCTTCGCCGAGCCGTACTTCTCCGAAGTGGTCCGCGGGGTCGGGGCGGCCCTCGCGGAGACCGACATCCAGCTCGT
CCTCACTCTGGCCGGCAGCGACCGCGAGCGCCGCCGCCTCGCGCAGTACCTCTCCGGACACCGGGTCGACGGCGTGCTGC
TGGTCTCCGTCCACGCCGGGGACCCGCTCCCGGAGCTGCTGGTGGAGCTGGGCATCCCGACGGTGATCAGCGGCCGGCGT
TCCGCGGCGGAGACGCTGCCCTGTGTGGACTCCGACAACCTGGCGGGAGCCGCCGAGGCCGTGCGCCACCTGCTCGACCG
GGGCCGCCGTACGATCGCCACGATCACCGGCCCGCTGGACGTGTACGGAGCCCGCTGCCGGCTCGACGGCTACCGCCAGG
CCCTGGCCGCCGCCGGCCGCCCCGTGGACGAGCGGCTGGTGGCGGTCGCCGACTTCACCGAGGAGGGCGGCCGCCGGGCC
ATGCGCGAGTTGTTGGAGCGCAGCCCCTCGCTCGACGCGGTCTTCGCCTCCTCGGACGTCATGGCGGCGGGCGCCCGGCG
GGAACTGCGTGCGGCCGGGCGCCGGATCCCGCACGACGTGGCCCTGGTCGGCTTCGACGACTCGGTGGTGGCCCGGCACA
TGGATCCGCCGCTGACCAGCGTCCGGCAGCCCATCGAGGAGATGGGCCGGACCATGGCGAGCATGCTGCTGGACCGCGTC
TCGGGACGAGGGGGGAGTGCCGTGGCCGCGGGCGGGCCGGCGGTCGTCCTGCCGAACAGGCTGGTGGTGCGGGAGTCGTC
CTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(12-57)

Periplasmic binding protein-like domain (Peripla_BP_3)

(181-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.95

98.271

0.363