Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K3169_RS05230 Genome accession   NZ_CP081201
Coordinates   1205460..1206680 (-) Length   406 a.a.
NCBI ID   WP_231667864.1    Uniprot ID   -
Organism   Pseudomonas phytophila strain ICMP 23753     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1200460..1211680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3169_RS05200 (K3169_05160) - 1200709..1201338 (-) 630 WP_027902141.1 DUF1780 domain-containing protein -
  K3169_RS05205 (K3169_05165) - 1201555..1202613 (+) 1059 WP_231678247.1 IS110 family transposase -
  K3169_RS05210 (K3169_05170) - 1203263..1203730 (+) 468 WP_027902142.1 hypothetical protein -
  K3169_RS05215 (K3169_05175) yacG 1203768..1203968 (-) 201 WP_027902143.1 DNA gyrase inhibitor YacG -
  K3169_RS05220 (K3169_05180) coaE 1203965..1204588 (-) 624 WP_263270468.1 dephospho-CoA kinase -
  K3169_RS05225 (K3169_05185) pilD 1204585..1205457 (-) 873 WP_263270470.1 prepilin peptidase Machinery gene
  K3169_RS05230 (K3169_05190) pilC 1205460..1206680 (-) 1221 WP_231667864.1 type II secretion system F family protein Machinery gene
  K3169_RS05235 (K3169_05195) pilB 1206683..1208377 (-) 1695 WP_231667863.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K3169_RS05240 (K3169_05200) pilA2 1208602..1209033 (+) 432 WP_231667862.1 pilin Machinery gene
  K3169_RS05245 (K3169_05205) nadC 1209449..1210297 (-) 849 WP_263270475.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44142.12 Da        Isoelectric Point: 10.0337

>NTDB_id=595627 K3169_RS05230 WP_231667864.1 1205460..1206680(-) (pilC) [Pseudomonas phytophila strain ICMP 23753]
MASKAAKVIVFTWEGTDKKGAKMTGELTGHNPALVKAQLRKQGINPTKVRKKPVSIFGGSGKKIKPLDIAFFSRQMATMM
KAGVPLLQSFDIIAEGSENPNMRKLIEEVKSEVAAGNSFATALRQKPQYFDDLYCNLVDAGEQAGALEALLDRVATYKEK
TEKLKAKIKKAMTYPIMVMIMAFIVSGIMLLFVVPKFQDIFAGFGAELPAFTLMVIGLSKVVQDWWLVILGLIFASIFLF
RRSYKGSQNFRDSVDRSLLKVPVIGPLIYKSSVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFRNAVNKVKQDVSTG
MQLNFSMRATGVFPSLAIQMTAIGEESGALDSMLDKVATYYEDEVDNMVDNLTAMMEPLIMGVLGVIVGGLVIAMYLPIF
KLGGAV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=595627 K3169_RS05230 WP_231667864.1 1205460..1206680(-) (pilC) [Pseudomonas phytophila strain ICMP 23753]
ATGGCCAGCAAAGCGGCGAAAGTTATCGTTTTTACGTGGGAAGGCACCGACAAGAAAGGCGCGAAGATGACCGGCGAACT
GACCGGCCATAATCCGGCGCTGGTCAAGGCGCAACTTCGCAAGCAGGGCATCAACCCGACCAAAGTGCGAAAAAAACCGG
TTTCGATTTTTGGTGGCAGCGGGAAGAAAATCAAACCGCTGGATATCGCGTTTTTCTCCCGGCAGATGGCAACCATGATG
AAAGCCGGGGTGCCGCTGCTGCAATCCTTCGACATCATCGCCGAAGGTTCGGAAAACCCGAACATGCGCAAACTGATCGA
AGAAGTGAAAAGCGAGGTCGCAGCCGGTAACAGTTTCGCCACTGCACTACGGCAGAAGCCGCAATATTTCGACGACCTGT
ACTGCAACCTTGTAGACGCCGGTGAGCAAGCCGGTGCGCTGGAAGCCCTGCTGGATCGCGTGGCGACTTACAAAGAAAAG
ACCGAAAAGCTCAAAGCCAAGATCAAAAAAGCCATGACCTATCCGATCATGGTGATGATTATGGCGTTCATCGTGTCCGG
GATTATGCTGCTTTTCGTGGTTCCTAAGTTTCAGGACATCTTCGCCGGTTTTGGTGCAGAGCTGCCGGCGTTCACCCTGA
TGGTAATTGGCCTGTCAAAAGTCGTTCAGGACTGGTGGCTGGTCATCCTGGGATTGATATTTGCCAGTATTTTCCTGTTC
CGACGCAGCTATAAAGGCTCACAGAATTTCCGTGATAGCGTCGACCGCAGCCTGCTGAAAGTCCCGGTTATCGGGCCGTT
GATCTATAAATCTTCGGTCGCGCGCTTTGCTCGTACGCTGTCCACCACCTTCGCTGCCGGTGTGCCGCTGGTGGAAGCGC
TGGACTCAGTGGCGGGCGCAACCGGTAACGTGGTCTTCCGCAACGCGGTGAACAAGGTCAAACAGGACGTTTCCACCGGC
ATGCAGCTTAACTTCTCCATGCGTGCCACCGGCGTGTTCCCCAGCCTTGCCATCCAAATGACGGCCATCGGCGAAGAGTC
GGGCGCACTGGACTCGATGCTCGACAAGGTCGCGACCTATTACGAGGATGAAGTCGATAACATGGTCGACAATCTGACCG
CCATGATGGAGCCGCTGATCATGGGTGTGCTCGGCGTCATCGTTGGCGGTCTGGTGATCGCCATGTACTTGCCGATCTTC
AAACTCGGAGGCGCAGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

73.645

100

0.736
  pilC Acinetobacter baylyi ADP1

58.578

100

0.589
  pilC Acinetobacter baumannii D1279779

58.578

100

0.589
  pilC Legionella pneumophila strain ERS1305867

51.232

100

0.512
  pilG Neisseria meningitidis 44/76-A

43.216

98.03

0.424
  pilG Neisseria gonorrhoeae MS11

43.216

98.03

0.424
  pilC Vibrio campbellii strain DS40M4

42.184

99.261

0.419
  pilC Vibrio cholerae strain A1552

43.112

96.552

0.416
  pilC Thermus thermophilus HB27

39.558

100

0.397