Detailed information NTG0595626

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: K3169_RS05225
• Genome accession: NZ_CP081201
• Coordinates: 1204585..1205457 (-)
• Length: 290 a.a.
• NCBI ID: WP_263270470.1
• Uniprot ID: -
• Organism: Pseudomonas phytophila strain ICMP 23753
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1199585..1210457

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K3169_RS05195 (K3169_05155)	-	1200203..1200712 (-)	510	WP_122397690.1	MOSC domain-containing protein	-
K3169_RS05200 (K3169_05160)	-	1200709..1201338 (-)	630	WP_027902141.1	DUF1780 domain-containing protein	-
K3169_RS05205 (K3169_05165)	-	1201555..1202613 (+)	1059	WP_231678247.1	IS110 family transposase	-
K3169_RS05210 (K3169_05170)	-	1203263..1203730 (+)	468	WP_027902142.1	hypothetical protein	-
K3169_RS05215 (K3169_05175)	yacG	1203768..1203968 (-)	201	WP_027902143.1	DNA gyrase inhibitor YacG	-
K3169_RS05220 (K3169_05180)	coaE	1203965..1204588 (-)	624	WP_263270468.1	dephospho-CoA kinase	-
K3169_RS05225 (K3169_05185)	pilD	1204585..1205457 (-)	873	WP_263270470.1	prepilin peptidase	Machinery gene
K3169_RS05230 (K3169_05190)	pilC	1205460..1206680 (-)	1221	WP_231667864.1	type II secretion system F family protein	Machinery gene
K3169_RS05235 (K3169_05195)	pilB	1206683..1208377 (-)	1695	WP_231667863.1	type IV-A pilus assembly ATPase PilB	Machinery gene
K3169_RS05240 (K3169_05200)	pilA2	1208602..1209033 (+)	432	WP_231667862.1	pilin	Machinery gene
K3169_RS05245 (K3169_05205)	nadC	1209449..1210297 (-)	849	WP_263270475.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32102.23 Da
• Isoelectric Point: 6.7368

>NTDB_id=595626 K3169_RS05225 WP_263270470.1 1204585..1205457(-) (pilD) [Pseudomonas phytophila strain ICMP 23753]
MLLVDFLASSPLAFVLSALILGLLVGSFLNVLIYRLPIMMERDWQAQSREMLKLPAEPESETFNLILPHSRCPHCAHQIR
PWENLPVLSYLFLGGKCSSCKAPISKRYPLVELTCGLLSGYIAWHFGFGWPAAAMLVLSWGLLAMSLIDADHQLLPDDLV
LPLLWMGLIVNSFGLFTNLSDALWGAVAGYLVLWSVYWLFKLITGKEGMGHGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGLIMLRLRNVETSTPIPFGPYLAIAGWIALLWGGQITDSYLQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=595626 K3169_RS05225 WP_263270470.1 1204585..1205457(-) (pilD) [Pseudomonas phytophila strain ICMP 23753]
ATGCTGCTTGTTGATTTTCTGGCCAGCTCACCGCTGGCCTTTGTTTTATCCGCACTGATTCTTGGCTTGTTGGTGGGCAG
CTTTCTCAATGTGCTGATTTATCGCCTGCCGATCATGATGGAGCGCGACTGGCAGGCTCAGTCCCGGGAAATGCTCAAAC
TGCCCGCCGAGCCTGAAAGCGAGACCTTCAACCTGATCCTGCCGCACTCCCGTTGTCCGCATTGCGCTCATCAGATTCGT
CCGTGGGAGAATCTGCCGGTGCTCAGCTACCTGTTTCTGGGTGGCAAATGCTCAAGCTGCAAAGCACCGATCAGCAAACG
TTACCCGCTGGTGGAGCTGACCTGCGGCCTGCTGTCCGGCTACATCGCCTGGCACTTCGGTTTTGGCTGGCCTGCTGCGG
CGATGCTGGTACTGAGCTGGGGCCTGCTGGCCATGAGTCTGATCGACGCCGACCACCAGTTGCTGCCTGACGACCTGGTC
TTACCGCTGCTGTGGATGGGCCTGATCGTCAACTCGTTCGGCCTGTTCACCAACCTGAGCGACGCGCTCTGGGGCGCAGT
GGCCGGTTATCTGGTGTTGTGGTCGGTGTACTGGCTGTTCAAACTGATCACTGGCAAAGAAGGCATGGGCCATGGCGACT
TCAAATTGCTGGCCATGCTCGGGGCCTGGGGTGGTTGGCAGATCCTGCCGTTGACCATCCTGCTTTCATCGCTGGTAGGG
GCAATATTGGGCCTGATCATGCTGCGTTTGCGTAATGTCGAAACCAGCACGCCGATCCCCTTCGGTCCCTATCTGGCCAT
CGCAGGCTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCCTATTTGCAATTTGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.159	95.172	0.534
pilD	Vibrio campbellii strain DS40M4	54.71	95.172	0.521
pilD	Acinetobacter baumannii D1279779	50.523	98.966	0.5
pilD	Acinetobacter nosocomialis M2	50.174	98.966	0.497
pilD	Neisseria gonorrhoeae MS11	50.746	92.414	0.469