Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K3819_RS24755 Genome accession   NZ_CP081200
Coordinates   5465149..5466366 (+) Length   405 a.a.
NCBI ID   WP_221398119.1    Uniprot ID   -
Organism   Pseudomonas sp. 3-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5460149..5471366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3819_RS24735 (K3819_24735) - 5461677..5461973 (+) 297 WP_085648751.1 DUF2845 domain-containing protein -
  K3819_RS24740 (K3819_24740) - 5462143..5462499 (-) 357 WP_210710590.1 BON domain-containing protein -
  K3819_RS24745 (K3819_24745) pilA/pilAI 5462797..5463219 (-) 423 WP_221398117.1 pilin Machinery gene
  K3819_RS24750 (K3819_24750) pilB 5463446..5465146 (+) 1701 WP_221398118.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K3819_RS24755 (K3819_24755) pilC 5465149..5466366 (+) 1218 WP_221398119.1 type II secretion system F family protein Machinery gene
  K3819_RS24760 (K3819_24760) pilD 5466368..5467240 (+) 873 WP_064599491.1 A24 family peptidase Machinery gene
  K3819_RS24765 (K3819_24765) coaE 5467237..5467860 (+) 624 WP_169431959.1 dephospho-CoA kinase -
  K3819_RS24770 (K3819_24770) yacG 5467857..5468057 (+) 201 WP_039771664.1 DNA gyrase inhibitor YacG -
  K3819_RS24775 (K3819_24775) - 5468064..5468279 (-) 216 WP_007959584.1 hypothetical protein -
  K3819_RS24780 (K3819_24780) - 5468345..5469034 (-) 690 WP_085612628.1 energy-coupling factor ABC transporter permease -
  K3819_RS24785 (K3819_24785) - 5469168..5469794 (+) 627 WP_007959580.1 DUF1780 domain-containing protein -
  K3819_RS24790 (K3819_24790) - 5469791..5470318 (+) 528 WP_221398120.1 MOSC domain-containing protein -
  K3819_RS24795 (K3819_24795) - 5470370..5470543 (+) 174 WP_007909875.1 DUF3094 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44062.68 Da        Isoelectric Point: 10.1093

>NTDB_id=595606 K3819_RS24755 WP_221398119.1 5465149..5466366(+) (pilC) [Pseudomonas sp. 3-2]
MAVKAAKVSVYAWEGTDRKGSKVTGELSGQNPALVKAQLRKQGINPGKVRKKSASLLSFSKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPAMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
ESLKAKIKKAMTYPSAVVLVAAVVTGILLVKVVPQFQSVFSGFGAELPAFTLMVISLSEFMQQWWWAILGALVAAFFGTR
HALKKSQALRDRRDAWFLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRIRQDVSTGM
QLNFSMRSTGIFPNMAVQMTAIGEESGALDEMLDKVAGFYEDEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=595606 K3819_RS24755 WP_221398119.1 5465149..5466366(+) (pilC) [Pseudomonas sp. 3-2]
ATGGCGGTCAAGGCAGCAAAAGTCAGCGTCTACGCCTGGGAAGGCACGGACCGTAAAGGCAGCAAGGTAACCGGCGAGTT
GAGCGGCCAAAACCCCGCACTGGTCAAGGCCCAGTTGCGCAAGCAAGGCATCAACCCCGGCAAGGTGCGCAAGAAATCCG
CCTCGTTGCTGAGCTTCAGCAAGCGCATCAAGGCCCAGGACATTGCCCTGTTCACCCGGCAGATGGCGACCATGATGAAG
GCCGGCGTGCCGCTGTTGCAGTCGTTCGACATCATTGGCGAAGGCTTCGAAAACCCGGCCATGCGCAAGCTGGTCGACGA
GGTGAAACAGGAGGTGGCCGCCGGCAACAGTTTCGCCGCCGCGCTGCGCAAGAAGCCGCAATATTTCGACGAGTTGTACT
GCAACCTGGTGGATGCCGGCGAGCAGTCCGGCGCCCTCGACACCCTGCTGGAACGGGTCGCGACCTACAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAGATCAAGAAGGCCATGACCTATCCGTCCGCCGTGGTACTGGTGGCGGCGGTGGTCACCGGGAT
TCTGCTGGTCAAGGTGGTGCCGCAGTTTCAGTCGGTGTTCTCCGGCTTCGGTGCCGAACTGCCGGCCTTCACGCTGATGG
TGATCAGCCTGTCCGAATTCATGCAGCAATGGTGGTGGGCGATTCTCGGTGCGCTGGTGGCCGCGTTTTTCGGCACCCGC
CATGCCCTGAAAAAATCCCAGGCCCTGCGCGATCGACGCGACGCCTGGTTTCTCAAGCTGCCGCTGGTGGGCACATTGAT
GTACAAGTCCGCCGTGGCGCGGTTTGCCCGGACCCTGTCGACTACCTTCGCCGCCGGTGTGCCGCTGGTGGAAGCGCTGG
ACTCGGTGGCCGGTGCCACCGGCAACGTGGTGTTCAAGCGTGCCGTGCTGCGCATCCGCCAGGACGTCTCTACCGGCATG
CAGCTGAATTTCTCGATGCGTTCCACCGGCATCTTTCCGAACATGGCGGTGCAGATGACCGCCATCGGCGAAGAGTCCGG
CGCACTGGACGAGATGCTCGACAAGGTCGCAGGTTTCTATGAGGACGAAGTGGACAACATGGTCGACAACCTCACCAGCC
TGATGGAGCCGTTCATCATGGTGGTGCTGGGGGTGATCGTCGGCGGTCTGGTGGTGGCGATGTACCTGCCGATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

75.062

100

0.751
  pilC Acinetobacter baylyi ADP1

59.559

100

0.6
  pilC Acinetobacter baumannii D1279779

59.314

100

0.598
  pilC Legionella pneumophila strain ERS1305867

53.75

98.765

0.531
  pilC Vibrio cholerae strain A1552

44.697

97.778

0.437
  pilG Neisseria gonorrhoeae MS11

43.424

99.506

0.432
  pilG Neisseria meningitidis 44/76-A

42.928

99.506

0.427
  pilC Vibrio campbellii strain DS40M4

41.626

100

0.417
  pilC Thermus thermophilus HB27

39.098

98.519

0.385