Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   M9A05_RS12295 Genome accession   NZ_CP097575
Coordinates   2660945..2662309 (-) Length   454 a.a.
NCBI ID   WP_034035235.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain UNC_PaerCF25     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2655945..2667309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9A05_RS12260 (M9A05_12260) thiS 2656179..2656379 (-) 201 WP_003084514.1 sulfur carrier protein ThiS -
  M9A05_RS12265 (M9A05_12265) - 2656482..2656859 (-) 378 WP_003084513.1 DUF423 domain-containing protein -
  M9A05_RS12270 (M9A05_12270) mtgA 2656896..2657627 (+) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  M9A05_RS12275 (M9A05_12275) - 2657632..2658237 (-) 606 WP_003084511.1 hypothetical protein -
  M9A05_RS12280 (M9A05_12280) rpoH 2658302..2659156 (-) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  M9A05_RS12285 (M9A05_12285) ftsX 2659270..2660277 (-) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  M9A05_RS12290 (M9A05_12290) ftsE 2660277..2660948 (-) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  M9A05_RS12295 (M9A05_12295) pilA 2660945..2662309 (-) 1365 WP_034035235.1 signal recognition particle-docking protein FtsY Machinery gene
  M9A05_RS12300 (M9A05_12300) - 2662430..2663827 (+) 1398 WP_003084498.1 pitrilysin family protein -
  M9A05_RS12305 (M9A05_12305) - 2663820..2665307 (+) 1488 WP_047105395.1 pitrilysin family protein -
  M9A05_RS12310 (M9A05_12310) rsmD 2665307..2665903 (+) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  M9A05_RS12315 (M9A05_12315) - 2665906..2666472 (+) 567 WP_003117889.1 hypothetical protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48320.74 Da        Isoelectric Point: 4.5272

>NTDB_id=595606 M9A05_RS12295 WP_034035235.1 2660945..2662309(-) (pilA) [Pseudomonas aeruginosa strain UNC_PaerCF25]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPPAPVAE
APLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTS
ASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPL
QVDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIF
DAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLAL
TKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=595606 M9A05_RS12295 WP_034035235.1 2660945..2662309(-) (pilA) [Pseudomonas aeruginosa strain UNC_PaerCF25]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGCCGGCGCCGGTTGCCGAA
GCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGCCCCGAGGCGCCCGTCGCACAACCCGAGCC
TATCCTCGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGG
CCGCCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGGCTGTCCAAGACCAGC
GCCAGCATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGAC
GCGCCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGG
AGCTGGCCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTG
CAGGTCGACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAA
GCTGGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCTGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGC
AGTTGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTC
GACGCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAA
CCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGC
TCGACGCCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTG
ACCAAACTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGG
TGTCGGCGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACG
CATGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(249-448)

SRP54-type protein, helical bundle domain (SRP54_N)

(164-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

46.804

96.476

0.452