Detailed information NTG0595607

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: K3819_RS24760
• Genome accession: NZ_CP081200
• Coordinates: 5466368..5467240 (+)
• Length: 290 a.a.
• NCBI ID: WP_064599491.1
• Uniprot ID: -
• Organism: Pseudomonas sp. 3-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5461368..5472240

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K3819_RS24735 (K3819_24735)	-	5461677..5461973 (+)	297	WP_085648751.1	DUF2845 domain-containing protein	-
K3819_RS24740 (K3819_24740)	-	5462143..5462499 (-)	357	WP_210710590.1	BON domain-containing protein	-
K3819_RS24745 (K3819_24745)	pilA/pilAI	5462797..5463219 (-)	423	WP_221398117.1	pilin	Machinery gene
K3819_RS24750 (K3819_24750)	pilB	5463446..5465146 (+)	1701	WP_221398118.1	type IV-A pilus assembly ATPase PilB	Machinery gene
K3819_RS24755 (K3819_24755)	pilC	5465149..5466366 (+)	1218	WP_221398119.1	type II secretion system F family protein	Machinery gene
K3819_RS24760 (K3819_24760)	pilD	5466368..5467240 (+)	873	WP_064599491.1	A24 family peptidase	Machinery gene
K3819_RS24765 (K3819_24765)	coaE	5467237..5467860 (+)	624	WP_169431959.1	dephospho-CoA kinase	-
K3819_RS24770 (K3819_24770)	yacG	5467857..5468057 (+)	201	WP_039771664.1	DNA gyrase inhibitor YacG	-
K3819_RS24775 (K3819_24775)	-	5468064..5468279 (-)	216	WP_007959584.1	hypothetical protein	-
K3819_RS24780 (K3819_24780)	-	5468345..5469034 (-)	690	WP_085612628.1	energy-coupling factor ABC transporter permease	-
K3819_RS24785 (K3819_24785)	-	5469168..5469794 (+)	627	WP_007959580.1	DUF1780 domain-containing protein	-
K3819_RS24790 (K3819_24790)	-	5469791..5470318 (+)	528	WP_221398120.1	MOSC domain-containing protein	-
K3819_RS24795 (K3819_24795)	-	5470370..5470543 (+)	174	WP_007909875.1	DUF3094 domain-containing protein	-
K3819_RS24800 (K3819_24800)	-	5470607..5471905 (+)	1299	WP_064599500.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32178.54 Da
• Isoelectric Point: 7.6641

>NTDB_id=595607 K3819_RS24760 WP_064599491.1 5466368..5467240(+) (pilD) [Pseudomonas sp. 3-2]
MPIDELLSLYPLAFVVAALLLGLVVGSFLNVLIWRLPKMLEREWRQQAHDVLGLPGESPLPTYNLMLPHSQCPHCGHRIR
AWENIPLLSYVCLRGRCSSCSAPISKRYPLTELACGLLSAFIAWHLGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFELFVPLHDALWGAVLGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AVLGVILLKLRDQKTSTPIPFGPYLAIAGWIALLWGGQITGFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=595607 K3819_RS24760 WP_064599491.1 5466368..5467240(+) (pilD) [Pseudomonas sp. 3-2]
ATGCCTATCGACGAACTCCTCAGCCTGTATCCGCTGGCCTTTGTCGTCGCCGCCCTGCTGCTGGGGCTGGTGGTGGGCAG
TTTCCTCAACGTGTTGATCTGGCGCCTGCCGAAAATGCTCGAGCGCGAATGGCGCCAGCAGGCTCACGATGTACTGGGCC
TGCCCGGTGAATCGCCATTGCCCACCTACAACCTGATGCTGCCGCACTCGCAATGCCCGCACTGTGGCCACCGGATCCGT
GCGTGGGAAAACATTCCCCTGTTGAGTTACGTGTGCCTGCGCGGGCGCTGTTCAAGTTGCAGCGCACCGATCAGCAAGCG
TTACCCGCTGACCGAACTGGCCTGCGGCCTGCTCTCGGCGTTCATCGCCTGGCACCTGGGTTTCGGCTGGCCGGCGTGCC
TGTTGATCGTGCTGACCTGGGGCCTGCTGGCCATGAGCCTGATCGACACCGAACATCAATTGCTGCCCGACGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGAGCTGTTCGTGCCGCTGCACGACGCCCTGTGGGGCGCGGT
GCTGGGCTATATGGCCCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGCATCGGTCACGGCGATT
TCAAGCTGCTGGCGCTGCTCGGGGCCTGGGGCGGCTGGCAGATTCTGCCGCTGACCATCCTCTTGTCCTCGCTGGTGGGC
GCCGTGCTCGGAGTGATTTTGCTCAAGCTGCGCGACCAGAAAACCTCGACGCCGATCCCCTTCGGCCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.837	97.241	0.514
pilD	Vibrio campbellii strain DS40M4	51.418	97.241	0.5
pilD	Acinetobacter baumannii D1279779	47.81	94.483	0.452
pilD	Acinetobacter nosocomialis M2	47.81	94.483	0.452
pilD	Neisseria gonorrhoeae MS11	47.778	93.103	0.445