Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   K1T74_RS00175 Genome accession   NZ_CP080462
Coordinates   38622..39737 (+) Length   371 a.a.
NCBI ID   WP_000654776.1    Uniprot ID   A0A2K2UIV5
Organism   Vibrio cholerae strain ICDC-VC702     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 33622..44737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T74_RS00155 rsmB 34551..35831 (-) 1281 WP_220105912.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  K1T74_RS00160 fmt 35887..36834 (-) 948 WP_220105913.1 methionyl-tRNA formyltransferase -
  K1T74_RS00165 def 36852..37361 (-) 510 WP_000115010.1 peptide deformylase -
  K1T74_RS00170 - 37501..38622 (+) 1122 WP_220105914.1 LysM peptidoglycan-binding domain-containing protein -
  K1T74_RS00175 dprA 38622..39737 (+) 1116 WP_000654776.1 DNA-processing protein DprA Machinery gene
  K1T74_RS00180 - 39740..40216 (+) 477 WP_069730545.1 DUF494 family protein -
  K1T74_RS00185 - 40232..40798 (+) 567 WP_000087517.1 type I DNA topoisomerase -
  K1T74_RS00190 - 40871..42004 (-) 1134 WP_220105915.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  K1T74_RS00195 purE 42008..42493 (-) 486 WP_220105916.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  K1T74_RS00200 - 42660..43217 (+) 558 WP_033931504.1 L-threonylcarbamoyladenylate synthase -
  K1T74_RS00205 hemF 43236..44153 (+) 918 WP_069730547.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 39960.95 Da        Isoelectric Point: 7.1952

>NTDB_id=593033 K1T74_RS00175 WP_000654776.1 38622..39737(+) (dprA) [Vibrio cholerae strain ICDC-VC702]
MKDQDLAAWLALCFTPKLGSKTISHLLATRLPAQLQSFTPKQWLASGLKPEQLVFLTTQAAKQAELCLQWRSAANNRYIV
TPHCPLYPRLLKEISSSPPILFIEGIWEAVHDPAVAIVGSRNASVDGRQIARQFATELAQSGLVVTSGLALGIDGYAHDG
ALQAQGQTVAVLGSGLAQVYPKQHQGLAERIIAQGALVSEFAPHTPPKADHFPRRNRIISGLSLGVVVVEAAEKSGSLIT
ARYAAEQGREVFVVPGSIFNAASQGSNQLIRQGACLVQSVQQIHQELKNALTWSLSEQVPYQATLFSAVQGDEELPFPEL
LANVGIEATPIDILASRTQIPVQDIMMQLLELELLGHVVAVPGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=593033 K1T74_RS00175 WP_000654776.1 38622..39737(+) (dprA) [Vibrio cholerae strain ICDC-VC702]
ATGAAAGATCAGGATTTAGCGGCATGGTTGGCGCTCTGTTTTACTCCTAAACTAGGCAGCAAAACCATTTCTCACCTGCT
TGCGACCCGTTTGCCAGCCCAGTTGCAAAGTTTTACGCCTAAGCAATGGTTGGCCAGCGGGCTTAAGCCCGAACAACTGG
TGTTTTTAACTACTCAAGCGGCTAAACAAGCCGAGCTGTGTTTGCAATGGCGATCAGCAGCCAATAACCGCTATATCGTC
ACTCCTCATTGCCCGCTTTACCCTCGTTTATTGAAAGAGATTAGCTCATCGCCTCCCATCCTGTTTATCGAAGGAATATG
GGAAGCGGTGCATGACCCTGCGGTGGCTATCGTCGGTAGTCGCAATGCCAGTGTTGATGGGCGGCAGATCGCTCGCCAAT
TTGCCACTGAGCTCGCGCAGTCGGGTTTAGTAGTCACCAGTGGTTTAGCGCTTGGTATTGATGGCTATGCGCACGATGGA
GCTTTGCAAGCACAAGGGCAAACCGTGGCAGTATTAGGTTCAGGGCTGGCGCAGGTTTACCCTAAACAGCATCAAGGGTT
AGCGGAGCGAATCATCGCCCAAGGGGCCTTGGTTTCTGAGTTTGCCCCTCACACACCTCCTAAAGCCGATCACTTTCCGC
GCCGTAACCGAATTATCAGCGGCTTATCGCTGGGCGTTGTGGTGGTAGAAGCTGCGGAGAAAAGCGGCTCACTCATCACT
GCGCGCTACGCCGCTGAGCAAGGGCGTGAGGTCTTTGTGGTTCCCGGCTCGATTTTTAATGCTGCCAGCCAAGGTAGCAA
TCAATTGATTCGTCAAGGCGCTTGTTTGGTGCAAAGTGTGCAACAAATTCATCAAGAGCTCAAAAATGCGCTGACTTGGT
CGCTCTCTGAACAAGTTCCTTATCAAGCAACACTTTTTTCTGCTGTACAGGGCGATGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGAATAGAAGCTACACCTATTGATATTCTCGCAAGCCGGACCCAGATACCGGTGCAAGATATCATGAT
GCAGCTCTTGGAGCTTGAGCTCCTTGGGCATGTGGTTGCAGTACCTGGTGGCTATATTAGAAAGGGGAGAGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-278)

DprA winged helix domain (DprA_WH)

(319-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K2UIV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

98.652

100

0.987
  dprA Vibrio campbellii strain DS40M4

58.108

99.73

0.58
  dprA Legionella pneumophila strain ERS1305867

43.583

100

0.439
  dprA Glaesserella parasuis strain SC1401

43.351

100

0.439
  dprA Neisseria meningitidis strain C311

37.594

100

0.404
  dprA Neisseria meningitidis MC58

37.594

100

0.404
  dprA Neisseria gonorrhoeae strain FA1090

36.776

100

0.394
  dprA Acinetobacter baumannii D1279779

43.505

89.218

0.388
  dprA Acinetobacter baumannii strain A118

43.202

89.218

0.385
  dprA Neisseria gonorrhoeae MS11

35.949

100

0.383
  dprA Acinetobacter baylyi ADP1

42.042

89.757

0.377
  dprA Haemophilus influenzae Rd KW20

48.746

75.202

0.367