Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PCA10_RS04770 Genome accession   NC_021499
Coordinates   1025213..1026430 (-) Length   405 a.a.
NCBI ID   WP_016490896.1    Uniprot ID   S6BCB5
Organism   Metapseudomonas resinovorans NBRC 106553     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1020213..1031430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCA10_RS04725 (PCA10_09530) - 1020579..1020752 (-) 174 WP_016490887.1 DUF3094 domain-containing protein -
  PCA10_RS04730 (PCA10_09540) - 1020848..1021474 (-) 627 WP_016490888.1 DUF1780 domain-containing protein -
  PCA10_RS04735 (PCA10_09550) - 1021608..1022030 (+) 423 WP_016490889.1 GNAT family N-acetyltransferase -
  PCA10_RS04740 (PCA10_09560) - 1022035..1022502 (+) 468 WP_041770136.1 hypothetical protein -
  PCA10_RS04745 (PCA10_09570) - 1022499..1023188 (+) 690 WP_016490891.1 energy-coupling factor ABC transporter permease -
  PCA10_RS04750 (PCA10_09580) - 1023308..1023523 (+) 216 WP_016490892.1 hypothetical protein -
  PCA10_RS04755 (PCA10_09590) yacG 1023533..1023733 (-) 201 WP_016490893.1 DNA gyrase inhibitor YacG -
  PCA10_RS04760 (PCA10_09600) coaE 1023730..1024341 (-) 612 WP_016490894.1 dephospho-CoA kinase -
  PCA10_RS04765 (PCA10_09610) pilD 1024338..1025210 (-) 873 WP_016490895.1 A24 family peptidase Machinery gene
  PCA10_RS04770 (PCA10_09620) pilC 1025213..1026430 (-) 1218 WP_016490896.1 type II secretion system F family protein Machinery gene
  PCA10_RS04775 (PCA10_09630) pilB 1026433..1028139 (-) 1707 WP_016490897.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PCA10_RS04780 (PCA10_09640) pilA2 1028411..1028857 (+) 447 WP_016490898.1 pilin Machinery gene
  PCA10_RS04785 (PCA10_09650) - 1028913..1030628 (+) 1716 WP_041770137.1 PglL family O-oligosaccharyltransferase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44041.93 Da        Isoelectric Point: 9.8565

>NTDB_id=59195 PCA10_RS04770 WP_016490896.1 1025213..1026430(-) (pilC) [Metapseudomonas resinovorans NBRC 106553]
MADKALKLSTFAWEGTDKKGSKVKGEISGQNPALVKAQLRKQGINPTRVRKKATSLLGGRKKIKPLDIALFTRQMATMMK
AGVPLMQSFDIIGEGFEKPAMRTLVNEVKQEVAAGNSLANSLRKKPEYFDELYCNLVDSGEQAGALETLLDRIATYKEKT
EALKAKIKKAMNYPIAVIVVAIIVSAILLIKVVPQFQSVFANFGAELPAFTQMVIGLSELLQEWWFIVLAVFFLIGFGLQ
QAHKKSQKFRDWVDHTVLKLPIVGDILYKSAVARFARTLATTFAAGVPLVDALDSVAGASGNVVFKNAVLKVKQDVSTGM
QLNFSMRTTGVFPAMAVQMTAIGEESGALDEMLDKVASFYEAEVDNAVDGLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=59195 PCA10_RS04770 WP_016490896.1 1025213..1026430(-) (pilC) [Metapseudomonas resinovorans NBRC 106553]
ATGGCGGACAAAGCGCTGAAACTGAGTACCTTCGCCTGGGAAGGTACCGACAAGAAAGGCTCCAAGGTCAAAGGCGAGAT
ATCAGGACAGAACCCCGCCTTGGTGAAGGCGCAGCTTCGCAAGCAAGGTATCAATCCCACCAGAGTGCGAAAGAAAGCCA
CCTCATTGCTCGGCGGAAGGAAGAAGATAAAACCCCTGGACATCGCCCTCTTCACCCGGCAGATGGCGACCATGATGAAA
GCTGGCGTGCCACTGATGCAGTCCTTCGACATCATTGGCGAGGGCTTCGAGAAGCCTGCCATGCGCACGCTGGTGAACGA
GGTCAAGCAGGAAGTGGCCGCCGGTAACAGCCTGGCAAACTCCCTGCGCAAGAAGCCGGAATACTTCGACGAACTGTACT
GCAACCTGGTCGACTCCGGCGAACAGGCCGGTGCTCTGGAAACCCTGCTGGACCGGATCGCCACCTACAAGGAAAAGACC
GAGGCGCTGAAGGCCAAGATCAAAAAAGCGATGAACTATCCGATTGCGGTCATCGTGGTCGCGATTATCGTTTCGGCGAT
CCTGCTGATCAAAGTGGTCCCTCAGTTCCAATCTGTTTTTGCCAACTTCGGCGCAGAACTACCAGCATTCACGCAGATGG
TTATCGGACTGTCCGAGCTTCTCCAAGAGTGGTGGTTTATTGTACTAGCCGTATTCTTCCTTATTGGTTTCGGACTTCAG
CAAGCACATAAGAAATCCCAGAAGTTCCGCGACTGGGTCGACCATACCGTCCTGAAACTCCCCATCGTCGGCGACATCCT
CTACAAGTCCGCCGTAGCCCGCTTCGCCCGAACCCTGGCAACCACTTTCGCTGCCGGCGTGCCCCTGGTGGACGCCCTGG
ACTCCGTGGCAGGCGCCAGCGGCAACGTGGTGTTCAAGAATGCGGTGCTCAAGGTCAAGCAGGATGTGTCCACCGGCATG
CAGCTGAACTTCTCCATGCGCACCACCGGCGTCTTCCCCGCCATGGCCGTGCAGATGACCGCCATCGGCGAAGAATCCGG
CGCCCTGGACGAGATGCTCGACAAGGTCGCCAGCTTCTACGAAGCCGAAGTGGACAACGCCGTCGACGGCCTGACCGCCC
TGATGGAGCCCATGATCATGGCCGTACTCGGCGTCCTGGTCGGCGGCCTGATCATCGCCATGTACCTGCCCATCTTCCAA
CTCGGCAACGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S6BCB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

79.259

100

0.793
  pilC Acinetobacter baylyi ADP1

61.084

100

0.612
  pilC Acinetobacter baumannii D1279779

61.139

99.753

0.61
  pilC Legionella pneumophila strain ERS1305867

52.13

98.519

0.514
  pilG Neisseria gonorrhoeae MS11

45.906

99.506

0.457
  pilG Neisseria meningitidis 44/76-A

45.658

99.506

0.454
  pilC Vibrio cholerae strain A1552

42.222

100

0.422
  pilC Vibrio campbellii strain DS40M4

41.278

100

0.415
  pilC Thermus thermophilus HB27

36.567

99.259

0.363

Multiple sequence alignment