Detailed information NTG0059194

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PCA10_RS04765
• Genome accession: NC_021499
• Coordinates: 1024338..1025210 (-)
• Length: 290 a.a.
• NCBI ID: WP_016490895.1
• Uniprot ID: S6AMG1
• Organism: Metapseudomonas resinovorans NBRC 106553
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1019338..1030210

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCA10_RS04725 (PCA10_09530)	-	1020579..1020752 (-)	174	WP_016490887.1	DUF3094 domain-containing protein	-
PCA10_RS04730 (PCA10_09540)	-	1020848..1021474 (-)	627	WP_016490888.1	DUF1780 domain-containing protein	-
PCA10_RS04735 (PCA10_09550)	-	1021608..1022030 (+)	423	WP_016490889.1	GNAT family N-acetyltransferase	-
PCA10_RS04740 (PCA10_09560)	-	1022035..1022502 (+)	468	WP_041770136.1	hypothetical protein	-
PCA10_RS04745 (PCA10_09570)	-	1022499..1023188 (+)	690	WP_016490891.1	energy-coupling factor ABC transporter permease	-
PCA10_RS04750 (PCA10_09580)	-	1023308..1023523 (+)	216	WP_016490892.1	hypothetical protein	-
PCA10_RS04755 (PCA10_09590)	yacG	1023533..1023733 (-)	201	WP_016490893.1	DNA gyrase inhibitor YacG	-
PCA10_RS04760 (PCA10_09600)	coaE	1023730..1024341 (-)	612	WP_016490894.1	dephospho-CoA kinase	-
PCA10_RS04765 (PCA10_09610)	pilD	1024338..1025210 (-)	873	WP_016490895.1	A24 family peptidase	Machinery gene
PCA10_RS04770 (PCA10_09620)	pilC	1025213..1026430 (-)	1218	WP_016490896.1	type II secretion system F family protein	Machinery gene
PCA10_RS04775 (PCA10_09630)	pilB	1026433..1028139 (-)	1707	WP_016490897.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PCA10_RS04780 (PCA10_09640)	pilA2	1028411..1028857 (+)	447	WP_016490898.1	pilin	Machinery gene

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31996.93 Da
• Isoelectric Point: 7.0715

>NTDB_id=59194 PCA10_RS04765 WP_016490895.1 1024338..1025210(-) (pilD) [Metapseudomonas resinovorans NBRC 106553]
MQLIDFLASHALAFVFCTLALGLLVGSFLNVVIHRLPQMMLRDWQEQAREVLSLPAEPKGPVFNLVLPNSRCPHCNHEIR
AWENIPVVSYLALRGKCSSCKAAISTRYPLVELVCGLLSAYVAWHFGFSWQAGAFLVLTWGLLAMSMIDVDHQLLPDALV
LPLLWLGLILNSQGLFASLEDALWGAVAGYMSLWSVYWLFKLVTGKEGMGHGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AVLGVIMLRLRNQDSTTPIPFGPYLAIAGWIALLWGDQITATYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=59194 PCA10_RS04765 WP_016490895.1 1024338..1025210(-) (pilD) [Metapseudomonas resinovorans NBRC 106553]
ATGCAGTTGATCGACTTCCTGGCCAGCCATGCGCTGGCCTTTGTTTTCTGCACCCTCGCCCTTGGTTTGTTGGTGGGCAG
TTTCCTCAATGTGGTGATCCATCGCCTGCCGCAGATGATGCTGCGCGATTGGCAGGAGCAGGCCCGCGAGGTGCTGAGCC
TGCCGGCCGAGCCCAAGGGCCCGGTGTTCAACCTGGTACTGCCGAATTCGCGCTGCCCCCACTGCAACCATGAGATCCGC
GCCTGGGAGAACATTCCCGTGGTCAGTTACCTGGCCCTGCGTGGCAAGTGCTCGTCGTGCAAGGCCGCCATCAGCACGCG
CTATCCCTTGGTGGAGCTAGTCTGCGGCCTGCTGTCGGCCTACGTCGCCTGGCATTTCGGCTTCAGTTGGCAGGCCGGAG
CCTTCCTGGTGCTGACCTGGGGCCTGCTGGCGATGAGCATGATCGACGTCGATCACCAGCTGCTGCCGGATGCACTGGTC
CTACCGCTGCTCTGGCTCGGGCTCATCCTCAACAGCCAGGGCCTGTTCGCCAGCCTGGAGGATGCGCTCTGGGGCGCGGT
GGCCGGCTACATGAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGCCACGGCGACT
TCAAGCTGCTGGCAATGCTCGGCGCCTGGGGCGGCTGGCAGGTACTGCCGCTGACCATCCTGCTCTCGTCCCTGGTGGGC
GCGGTGCTGGGGGTGATCATGCTGCGCCTGCGCAACCAGGACAGCACCACGCCCATCCCCTTCGGCCCCTACCTGGCCAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGATCAAATAACGGCGACCTATCTGCAGTTCGCCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

3D structure

• AlphaFold DB: S6AMG1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.015	91.724	0.514
pilD	Vibrio campbellii strain DS40M4	54.015	94.483	0.51
pilD	Acinetobacter baumannii D1279779	49.306	99.31	0.49
pilD	Acinetobacter nosocomialis M2	48.958	99.31	0.486
pilD	Neisseria gonorrhoeae MS11	51.923	89.655	0.466