Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   EGT72_RS14315 Genome accession   NZ_CP079792
Coordinates   2884755..2886833 (-) Length   692 a.a.
NCBI ID   WP_125280898.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ_082     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2879755..2891833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT72_RS14305 (EGT72_014305) - 2882221..2883060 (-) 840 WP_125280901.1 hypothetical protein -
  EGT72_RS14310 (EGT72_014310) aroB 2883068..2884153 (-) 1086 WP_125280900.1 3-dehydroquinate synthase -
  EGT72_RS18465 - 2884184..2884666 (-) 483 WP_252715852.1 shikimate kinase -
  EGT72_RS14315 (EGT72_014315) pilQ 2884755..2886833 (-) 2079 WP_125280898.1 type IV pilus secretin PilQ Machinery gene
  EGT72_RS14320 (EGT72_014320) pilP 2886853..2887380 (-) 528 WP_004691496.1 pilus assembly protein PilP Machinery gene
  EGT72_RS14325 (EGT72_014325) pilO 2887380..2888102 (-) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  EGT72_RS14330 (EGT72_014330) pilN 2888099..2888755 (-) 657 WP_004691498.1 PilN domain-containing protein Machinery gene
  EGT72_RS14335 (EGT72_014335) pilM 2888755..2889813 (-) 1059 WP_004978085.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 75026.36 Da        Isoelectric Point: 5.1422

>NTDB_id=589532 EGT72_RS14315 WP_125280898.1 2884755..2886833(-) (pilQ) [Acinetobacter johnsonii strain AJ_082]
MNNSAKDFIFGDGNTMNHMFRQFSMGAIAMAVMQAASAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPQAYQLEQPSRLV
LDFDKAQQSLKQGSIVVATAEASTVDVTSDAQRSRLTVNLADAGAFTTRVEGNTFILKINSAKPTLATPVAAARSEQGIS
NIGFQRGSDGEGQVVIDLKGSTTPVDVKQQGSKIVVRVLGNKIPAHLSRRLNVNDFATPVSTIDAQNDGSNGLITIQSNG
SFEYMAYQAEDKLTISLKRPEDKNPMKPKAPSAYTGKKISLDFQDIEVRRVLQLLADFTGINMVASDTVQGNITLRLKDV
PWDQALDIIMKTKNLDKRRNGNVIWIAPVAELIKSEDDEAKAIAQSIKLAPIQTDYIQLSYAKAADILKLLEDSRNSKGA
ASNGTAGTDSLALESLLSSRGSVVADLRTNTLIVNDTSQNIDKIRRMIDLLDVAVKQVMVEARIVTASTDFSRELGIKWS
AQKLGNSPVWGGDFQPSFDLGVDLATNTAGTFNFGLLKISDYMLNLELTALQADGHGEVLSAPKVLTGDKQKAYILRGTE
IPYQTYSATEGLKTEFRAANLKLEVTPSITPDGKVQMALLVEKDSIGAITNDGIAIDTSELQTNVLVDDGETVVLGGIFD
DVKRNDYEKVPFLADLPVVGNLFKNNVKTTMQTELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=589532 EGT72_RS14315 WP_125280898.1 2884755..2886833(-) (pilQ) [Acinetobacter johnsonii strain AJ_082]
ATGAATAATAGTGCTAAAGATTTTATATTTGGGGATGGCAATACGATGAACCATATGTTCCGTCAGTTTTCAATGGGTGC
AATTGCAATGGCGGTGATGCAGGCTGCAAGTGCGCAAGTCAGTATTACGAATATTGTGCCGATGCAAATTCCGGGACAGG
GAACAGAAATTCGTGTCATGTTCAACGGTTTGCCACCACAGCCGCAGGCCTATCAGTTGGAACAGCCATCCCGTTTGGTT
TTAGATTTTGATAAAGCACAGCAGAGCTTAAAACAAGGCAGTATTGTAGTGGCAACGGCTGAAGCTAGCACTGTGGATGT
GACTTCAGATGCACAGCGTTCACGTTTAACCGTAAATTTGGCTGATGCCGGTGCATTTACTACACGTGTTGAAGGTAATA
CCTTTATTCTGAAAATTAACTCAGCGAAACCAACGCTAGCAACACCTGTTGCTGCAGCGCGTTCAGAGCAAGGTATTTCA
AATATTGGATTCCAACGTGGTTCAGACGGTGAAGGCCAAGTTGTCATTGATTTAAAAGGTAGCACTACCCCTGTCGATGT
GAAACAACAAGGCAGTAAAATTGTGGTGCGCGTTTTGGGGAATAAAATTCCTGCCCACTTATCGCGCCGTCTCAATGTGA
ATGATTTCGCAACGCCTGTATCGACCATCGATGCACAAAACGATGGCAGTAACGGCCTGATCACGATCCAATCGAATGGC
AGTTTTGAATATATGGCTTATCAGGCTGAAGATAAGCTCACCATTAGTTTAAAGCGTCCTGAAGATAAAAATCCAATGAA
GCCTAAAGCACCAAGTGCTTATACAGGCAAAAAGATTTCTTTAGATTTTCAAGATATTGAAGTGCGACGTGTATTACAGC
TCTTGGCTGATTTTACAGGCATTAACATGGTGGCTTCTGACACTGTACAAGGTAATATTACCTTGCGCCTGAAGGATGTT
CCGTGGGATCAGGCGCTTGATATCATTATGAAAACCAAGAACTTGGATAAACGACGTAATGGTAATGTAATTTGGATTGC
TCCTGTAGCTGAACTGATCAAATCTGAGGATGATGAAGCTAAAGCCATTGCACAAAGTATTAAACTTGCACCGATTCAAA
CCGATTATATTCAGTTGAGCTATGCGAAAGCTGCTGATATTTTAAAATTGCTAGAAGATTCTCGAAATAGCAAAGGGGCG
GCATCCAACGGTACGGCTGGCACAGATTCACTAGCTTTAGAAAGCTTATTGAGTTCACGCGGTAGTGTGGTTGCCGATTT
ACGAACCAATACTTTAATCGTAAACGACACATCGCAGAACATTGATAAGATCCGCCGGATGATTGACTTACTTGATGTGG
CTGTAAAGCAGGTGATGGTTGAAGCGCGTATTGTGACTGCTTCTACGGACTTTTCTCGTGAGTTGGGGATTAAGTGGAGT
GCACAAAAGCTGGGCAATAGTCCAGTATGGGGCGGGGATTTCCAACCGAGTTTTGATTTGGGGGTGGATTTAGCAACAAA
CACGGCTGGTACATTTAACTTCGGGTTATTGAAAATCTCGGATTATATGTTAAACCTTGAGTTAACGGCGCTACAGGCAG
ATGGTCATGGTGAGGTGTTATCAGCACCGAAAGTACTTACTGGCGATAAACAAAAAGCTTATATTTTACGAGGAACAGAG
ATTCCTTATCAAACATATAGCGCGACTGAGGGTTTGAAAACAGAATTCCGTGCGGCTAACTTAAAGCTAGAGGTGACTCC
AAGTATCACGCCTGATGGTAAAGTTCAGATGGCACTCTTGGTTGAGAAAGACTCCATTGGTGCGATTACTAATGATGGTA
TTGCGATTGACACCAGTGAATTACAAACCAATGTCTTGGTAGATGATGGTGAGACGGTTGTACTGGGTGGTATTTTTGAT
GATGTGAAACGTAATGACTATGAAAAAGTGCCATTTCTAGCTGATTTACCAGTGGTGGGGAATTTATTTAAGAACAATGT
CAAAACTACCATGCAAACTGAGTTGTTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(376-457)

Bacterial type II and III secretion system protein (Secretin)

(530-684)

AMIN domain (AMIN)

(55-135)

Secretin and TonB N terminus short domain (STN)

(305-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

64.681

100

0.675
  pilQ Acinetobacter baumannii strain A118

64.543

100

0.673
  comQ Acinetobacter baylyi ADP1

62.817

100

0.645
  pilQ Pseudomonas aeruginosa PAK

39.306

100

0.393
  pilQ Legionella pneumophila strain Lp02

37.356

100

0.376
  pilQ Legionella pneumophila strain ERS1305867

37.628

98.699

0.371
  pilQ Neisseria gonorrhoeae strain FA1090

34.765

100

0.363