Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   EGT72_RS14320 Genome accession   NZ_CP079792
Coordinates   2886853..2887380 (-) Length   175 a.a.
NCBI ID   WP_004691496.1    Uniprot ID   A0A2W5RPS2
Organism   Acinetobacter johnsonii strain AJ_082     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2881853..2892380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT72_RS14305 (EGT72_014305) - 2882221..2883060 (-) 840 WP_125280901.1 hypothetical protein -
  EGT72_RS14310 (EGT72_014310) aroB 2883068..2884153 (-) 1086 WP_125280900.1 3-dehydroquinate synthase -
  EGT72_RS18465 - 2884184..2884666 (-) 483 WP_252715852.1 shikimate kinase -
  EGT72_RS14315 (EGT72_014315) pilQ 2884755..2886833 (-) 2079 WP_125280898.1 type IV pilus secretin PilQ Machinery gene
  EGT72_RS14320 (EGT72_014320) pilP 2886853..2887380 (-) 528 WP_004691496.1 pilus assembly protein PilP Machinery gene
  EGT72_RS14325 (EGT72_014325) pilO 2887380..2888102 (-) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  EGT72_RS14330 (EGT72_014330) pilN 2888099..2888755 (-) 657 WP_004691498.1 PilN domain-containing protein Machinery gene
  EGT72_RS14335 (EGT72_014335) pilM 2888755..2889813 (-) 1059 WP_004978085.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19385.59 Da        Isoelectric Point: 7.1331

>NTDB_id=589533 EGT72_RS14320 WP_004691496.1 2886853..2887380(-) (pilP) [Acinetobacter johnsonii strain AJ_082]
MKYQNLMLSLCVGLFLIGCDSRIDAVNMQMAEIRNQPPLPIEPAPDFPPVPTFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNLSRQLQPLESYAIESLNMKGSMRGQNGQILALIQTPDGEIERVQRGSYLGMNHGRVINITATQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=589533 EGT72_RS14320 WP_004691496.1 2886853..2887380(-) (pilP) [Acinetobacter johnsonii strain AJ_082]
ATGAAATATCAAAATCTCATGCTTAGTCTCTGCGTTGGACTATTTCTTATCGGTTGTGATTCACGTATTGATGCGGTCAA
TATGCAAATGGCTGAAATTCGCAATCAGCCACCATTGCCGATTGAGCCTGCGCCAGATTTTCCACCTGTACCGACTTTTA
ATTATGCCGCACATCAATTAAAGAGTCCGTTTATGCCAAGCTCATTGGCAGCTGAATTGAAAATTATGGCTGGAAAGCGT
GTTTATCCAAACTTATCTCGCCAATTACAACCTTTGGAAAGTTATGCGATTGAATCGCTTAACATGAAAGGTAGTATGCG
CGGGCAAAATGGACAAATTTTGGCGTTGATTCAAACCCCTGATGGTGAAATTGAACGCGTGCAGCGTGGTAGTTATTTGG
GGATGAATCATGGTCGTGTGATTAATATCACCGCCACACAAATTGATTTGATTGAAATTATTCCGGATGGGCGTGAGGGC
TATGTCGAGCGCCCGAGAAGCCTAGTATTAATTGGGCCGGCGCCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(29-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2W5RPS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

76.571

100

0.766
  comL Acinetobacter baylyi ADP1

71.429

100

0.714