Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   EGT72_RS14330 Genome accession   NZ_CP079792
Coordinates   2888099..2888755 (-) Length   218 a.a.
NCBI ID   WP_004691498.1    Uniprot ID   A0A380U6M1
Organism   Acinetobacter johnsonii strain AJ_082     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2883099..2893755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT72_RS18465 - 2884184..2884666 (-) 483 WP_252715852.1 shikimate kinase -
  EGT72_RS14315 (EGT72_014315) pilQ 2884755..2886833 (-) 2079 WP_125280898.1 type IV pilus secretin PilQ Machinery gene
  EGT72_RS14320 (EGT72_014320) pilP 2886853..2887380 (-) 528 WP_004691496.1 pilus assembly protein PilP Machinery gene
  EGT72_RS14325 (EGT72_014325) pilO 2887380..2888102 (-) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  EGT72_RS14330 (EGT72_014330) pilN 2888099..2888755 (-) 657 WP_004691498.1 PilN domain-containing protein Machinery gene
  EGT72_RS14335 (EGT72_014335) pilM 2888755..2889813 (-) 1059 WP_004978085.1 pilus assembly protein PilM Machinery gene
  EGT72_RS14340 (EGT72_014340) ponA 2889979..2892507 (+) 2529 WP_125280897.1 penicillin-binding protein PBP1a -
  EGT72_RS14345 (EGT72_014345) - 2892539..2893345 (-) 807 WP_125280896.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24225.67 Da        Isoelectric Point: 5.4468

>NTDB_id=589535 EGT72_RS14330 WP_004691498.1 2888099..2888755(-) (pilN) [Acinetobacter johnsonii strain AJ_082]
MAKINLLPWRDALREKRKKEFIAYCVGAALVGVLAVALAWFFYSQKLEDQEQANQLVVSTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQGQRPVAVRLVDEMVRVTPSNMYITKFVRTGDKFTIEGKAESPNTVAEFLRNLEASAWYRNAFMNSFLV
AEEKKDKAPSSIVPRVEETYGTFVVTADLDEIAQPVAPNATTPEAASTVNNSTAGAAQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=589535 EGT72_RS14330 WP_004691498.1 2888099..2888755(-) (pilN) [Acinetobacter johnsonii strain AJ_082]
ATGGCAAAAATAAACCTACTCCCTTGGCGTGATGCGTTAAGAGAGAAACGAAAAAAAGAATTTATTGCCTATTGTGTTGG
GGCTGCATTAGTTGGGGTTTTAGCTGTTGCTTTGGCTTGGTTCTTTTACAGTCAAAAACTTGAAGATCAAGAACAAGCCA
ATCAGTTGGTGGTGAGTACCAATCAAAACTTAGATGTTCAATTAAAGTCATTGGAAGGTCTACAAGAACAGCGCAATGCA
ATTGTAGAACGGATGAAGTTGATCCAAGGTTTGCAAGGTCAACGCCCTGTAGCTGTGCGTTTAGTGGATGAAATGGTACG
TGTCACTCCAAGTAATATGTACATTACTAAGTTTGTGCGTACGGGTGATAAATTTACCATTGAAGGGAAAGCGGAAAGCC
CGAATACAGTTGCGGAGTTCTTACGCAACCTAGAAGCATCGGCGTGGTATCGCAATGCCTTTATGAATTCATTCTTGGTT
GCTGAAGAGAAAAAAGATAAAGCACCAAGTTCCATCGTGCCACGTGTTGAAGAAACCTATGGCACCTTTGTGGTCACGGC
AGATTTAGATGAGATTGCACAGCCAGTAGCGCCTAATGCGACGACACCTGAAGCCGCAAGTACAGTTAATAATTCAACAG
CGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380U6M1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

69.378

95.872

0.665
  comN Acinetobacter baylyi ADP1

73.604

90.367

0.665