Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   KX728_RS01970 Genome accession   NZ_CP079724
Coordinates   389003..389398 (+) Length   131 a.a.
NCBI ID   WP_000282459.1    Uniprot ID   A0A1X1GBD7
Organism   Streptococcus oralis strain 34     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 384003..394398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS01940 (KX728_01940) rpoE 384182..384772 (+) 591 WP_000418415.1 DNA-directed RNA polymerase subunit delta -
  KX728_RS01945 (KX728_01945) - 385090..386697 (+) 1608 WP_215804985.1 CTP synthase -
  KX728_RS01950 (KX728_01950) - 386864..387163 (+) 300 WP_215804984.1 DUF4651 domain-containing protein -
  KX728_RS01955 (KX728_01955) - 387160..387477 (+) 318 WP_215804983.1 thioredoxin family protein -
  KX728_RS01960 (KX728_01960) ytpR 387493..388119 (+) 627 WP_215804982.1 YtpR family tRNA-binding protein -
  KX728_RS01965 (KX728_01965) - 388161..388925 (+) 765 WP_215804981.1 SDR family NAD(P)-dependent oxidoreductase -
  KX728_RS01970 (KX728_01970) ssbB/cilA 389003..389398 (+) 396 WP_000282459.1 single-stranded DNA-binding protein Machinery gene
  KX728_RS01975 (KX728_01975) groES 389555..389839 (+) 285 WP_000917320.1 co-chaperone GroES -
  KX728_RS01980 (KX728_01980) groL 389855..391477 (+) 1623 WP_215804980.1 chaperonin GroEL -
  KX728_RS01985 (KX728_01985) - 391602..392369 (+) 768 WP_049519800.1 epoxyqueuosine reductase QueH -
  KX728_RS01990 (KX728_01990) - 392439..392972 (-) 534 WP_000775318.1 DUF402 domain-containing protein -
  KX728_RS01995 (KX728_01995) recX 393061..393837 (-) 777 WP_049519799.1 recombination regulator RecX -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14851.79 Da        Isoelectric Point: 5.9409

>NTDB_id=588966 KX728_RS01970 WP_000282459.1 389003..389398(+) (ssbB/cilA) [Streptococcus oralis strain 34]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNLVLWGKLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLATGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=588966 KX728_RS01970 WP_000282459.1 389003..389398(+) (ssbB/cilA) [Streptococcus oralis strain 34]
ATGTATAATAAAGTTATCATGATTGGGCGCTTGACGTCTACACCAGAATTGCACAAAACCAACAACGACAAGTCAGTAGC
TCGCGCAACTATTGCTGTGAACCGTCGTTACAAAGACCAAAATGGGGAACGTGAAGCTGACTTTGTCAATCTTGTTCTTT
GGGGGAAATTGGCTGAAACCTTGGCAAGCTACGCAACCAAAGGTAGTCTTATCTCTGTGGATGGAGAACTTCGTACCCGT
CGCTTTGAGAAAAATGGTCAAATGAACTATGTGACTGAAGTTCTTGCCACAGGATTCCAACTTTTGGAAAGCCGCGCCCA
ACGTGCTATGCGTGAAAATAACGCTGGACAGGATTTGGCAGACTTGGTTTTGGAAGAGGAGGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1GBD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus mitis NCTC 12261

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae Rx1

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae D39

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae R6

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae TIGR4

96.947

100

0.969
  ssbB/cilA Streptococcus mitis SK321

96.183

100

0.962
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB Lactococcus lactis subsp. cremoris KW2

60.714

85.496

0.519
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbB Bacillus subtilis subsp. subtilis str. 168

45.37

82.443

0.374