Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KU891_RS10455 Genome accession   NZ_CP078081
Coordinates   2034351..2034686 (+) Length   111 a.a.
NCBI ID   WP_000982007.1    Uniprot ID   A0A7D4DM73
Organism   Bacillus tropicus strain EMB20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2029351..2039686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU891_RS10430 (KU891_10415) - 2029636..2030376 (-) 741 WP_077316921.1 hypothetical protein -
  KU891_RS10435 (KU891_10420) - 2030486..2031133 (+) 648 WP_000165940.1 HD domain-containing protein -
  KU891_RS10440 (KU891_10425) - 2031130..2033025 (+) 1896 WP_000783209.1 ABC-F family ATP-binding cassette domain-containing protein -
  KU891_RS10445 (KU891_10430) - 2033101..2033832 (+) 732 WP_139888713.1 Bax inhibitor-1/YccA family protein -
  KU891_RS10450 (KU891_10435) - 2033938..2034192 (+) 255 WP_000975122.1 DUF4318 domain-containing protein -
  KU891_RS10455 (KU891_10440) ssbA 2034351..2034686 (+) 336 WP_000982007.1 single-stranded DNA-binding protein Machinery gene
  KU891_RS10460 (KU891_10445) - 2035235..2036362 (+) 1128 WP_248139692.1 conserved virulence factor C family protein -
  KU891_RS10465 (KU891_10450) - 2036366..2036749 (+) 384 WP_000634879.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  KU891_RS10470 (KU891_10455) - 2036833..2037267 (+) 435 WP_000063713.1 BrxA/BrxB family bacilliredoxin -
  KU891_RS10475 (KU891_10460) - 2037317..2038093 (+) 777 WP_139888711.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12757.59 Da        Isoelectric Point: 9.4344

>NTDB_id=586603 KU891_RS10455 WP_000982007.1 2034351..2034686(+) (ssbA) [Bacillus tropicus strain EMB20]
MMNRVVLIGRLTKEPELYYTKQGAAYARICIAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=586603 KU891_RS10455 WP_000982007.1 2034351..2034686(+) (ssbA) [Bacillus tropicus strain EMB20]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGCCGCTTATGC
AAGAATATGTATTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAGGGGTCACTTGTTGGGATTACAGGGCGTATTCAGACGAGT
AATTACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D4DM73

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

95.495

0.568
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

95.495

0.541
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.786

100

0.523
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

94.595

0.432
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae Rx1

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae D39

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae R6

40

99.099

0.396
  ssbB/cilA Streptococcus mitis SK321

40

99.099

0.396
  ssbA Streptococcus mutans UA159

40

99.099

0.396