Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA/cglA   Type   Machinery gene
Locus tag   KV238_RS02810 Genome accession   NZ_CP078012
Coordinates   578396..579334 (-) Length   312 a.a.
NCBI ID   WP_230923803.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ_18-036     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 573396..584334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV238_RS02770 (KV238_02765) - 573417..574619 (-) 1203 WP_126436211.1 acetate kinase -
  KV238_RS02775 (KV238_02770) comYH 574679..575632 (-) 954 WP_165627046.1 class I SAM-dependent methyltransferase Machinery gene
  KV238_RS02780 (KV238_02775) comGG 575694..576056 (-) 363 WP_012677238.1 competence type IV pilus minor pilin ComGG -
  KV238_RS02785 (KV238_02780) comYF 576034..576468 (-) 435 WP_014622144.1 competence type IV pilus minor pilin ComGF Machinery gene
  KV238_RS02790 (KV238_02785) comGE 576455..576745 (-) 291 WP_230923802.1 competence type IV pilus minor pilin ComGE -
  KV238_RS02795 (KV238_02790) comGD 576702..577127 (-) 426 WP_042669821.1 competence type IV pilus minor pilin ComGD -
  KV238_RS02800 (KV238_02795) comGC/cglC 577105..577428 (-) 324 WP_115250221.1 competence type IV pilus major pilin ComGC Machinery gene
  KV238_RS02805 (KV238_02800) comYB 577429..578463 (-) 1035 WP_230923946.1 competence type IV pilus assembly protein ComGB Machinery gene
  KV238_RS02810 (KV238_02805) comGA/cglA 578396..579334 (-) 939 WP_230923803.1 competence type IV pilus ATPase ComGA Machinery gene
  KV238_RS02815 (KV238_02810) - 579515..580162 (-) 648 WP_230923804.1 ABC transporter ATP-binding protein -
  KV238_RS02820 (KV238_02815) - 580164..582167 (-) 2004 Protein_522 DUF1430 domain-containing protein -
  KV238_RS02825 (KV238_02820) - 582704..583069 (-) 366 WP_037580641.1 DUF1033 family protein -
  KV238_RS02830 (KV238_02825) - 583130..584176 (-) 1047 WP_230923947.1 acyltransferase -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35224.41 Da        Isoelectric Point: 6.8988

>NTDB_id=586248 KV238_RS02810 WP_230923803.1 578396..579334(-) (comGA/cglA) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
MIQELAKRLIRQAEELQAQDIYILPRGTGYELLMRVGDDRRLIDVCESDRMANLISHFKFVAGMNVGEKRRCQLGACDYD
LDGTKVSLRLSAVGDYQGQESLVIRLLYHHQRQLRYWFDGLERVTSAIGARGLYLFSGPVGSGKTTLVYQLVSDYCKELQ
VISIEDPVEIKNDQLLQLQVNDSIGMTYDNLIKLSLRHRPDVLIIGEIRDTQTARAVIRASLTGAMVFSTVHAKSISGVY
ARLLELGISRAELDNSLAMVAYQRFISGGALIDCAQKEFEHHQASQWNQQIDQLLAEGHLNTKQARLEKIIQ

Nucleotide


Download         Length: 939 bp        

>NTDB_id=586248 KV238_RS02810 WP_230923803.1 578396..579334(-) (comGA/cglA) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
ATGATTCAAGAATTAGCCAAGCGGCTTATCAGGCAGGCTGAAGAATTGCAGGCTCAGGATATTTATATACTACCAAGGGG
GACAGGCTATGAGCTTTTGATGAGGGTAGGTGATGACAGGAGGCTAATAGATGTTTGTGAAAGTGATCGGATGGCTAATC
TTATTAGTCACTTTAAGTTCGTTGCAGGAATGAATGTGGGCGAAAAAAGACGCTGCCAGCTCGGTGCTTGTGACTACGAC
CTTGATGGCACTAAGGTATCTCTACGATTATCAGCTGTGGGTGACTATCAGGGACAGGAGAGCTTGGTTATTCGTCTCTT
GTATCATCATCAACGCCAGCTCAGGTATTGGTTTGATGGTTTAGAGCGAGTCACATCAGCTATTGGAGCCAGAGGCCTTT
ACCTCTTTTCTGGACCGGTTGGATCAGGTAAGACAACCCTGGTGTATCAGCTAGTCTCTGACTATTGCAAGGAGCTTCAG
GTGATCAGTATTGAGGATCCTGTGGAAATAAAAAATGACCAGCTCCTGCAATTACAGGTTAACGACAGCATTGGCATGAC
ATACGATAATCTGATTAAGCTCTCCTTGCGTCATCGTCCAGATGTGTTGATTATCGGAGAAATTAGAGATACACAGACTG
CTAGAGCGGTTATTAGGGCTAGCCTAACAGGAGCAATGGTCTTTTCAACCGTCCATGCAAAGAGTATTTCAGGCGTTTAC
GCTAGGCTGCTAGAATTAGGCATTTCTAGGGCAGAATTGGATAATAGTCTAGCAATGGTTGCTTACCAGCGATTTATTAG
TGGAGGTGCTTTAATTGATTGTGCGCAAAAGGAATTTGAACATCATCAAGCCAGCCAGTGGAATCAGCAGATTGATCAGC
TTCTTGCAGAGGGACATCTCAATACCAAGCAGGCAAGGCTTGAAAAAATTATCCAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

67.742

99.359

0.673
  comYA Streptococcus mutans UA140

62.379

99.679

0.622
  comYA Streptococcus mutans UA159

62.379

99.679

0.622
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

61.29

99.359

0.609
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

60.968

99.359

0.606
  comGA/cglA/cilD Streptococcus pneumoniae D39

60.968

99.359

0.606
  comGA/cglA/cilD Streptococcus pneumoniae R6

60.968

99.359

0.606
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

60.968

99.359

0.606
  comYA Streptococcus gordonii str. Challis substr. CH1

60.645

99.359

0.603
  comGA Lactococcus lactis subsp. cremoris KW2

52.412

99.679

0.522
  comGA Latilactobacillus sakei subsp. sakei 23K

39.796

94.231

0.375