Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   KV238_RS02785 Genome accession   NZ_CP078012
Coordinates   576034..576468 (-) Length   144 a.a.
NCBI ID   WP_014622144.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ_18-036     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 571034..581468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV238_RS02765 (KV238_02760) - 572434..573048 (+) 615 WP_021320266.1 hypothetical protein -
  KV238_RS02770 (KV238_02765) - 573417..574619 (-) 1203 WP_126436211.1 acetate kinase -
  KV238_RS02775 (KV238_02770) comYH 574679..575632 (-) 954 WP_165627046.1 class I SAM-dependent methyltransferase Machinery gene
  KV238_RS02780 (KV238_02775) comGG 575694..576056 (-) 363 WP_012677238.1 competence type IV pilus minor pilin ComGG -
  KV238_RS02785 (KV238_02780) comYF 576034..576468 (-) 435 WP_014622144.1 competence type IV pilus minor pilin ComGF Machinery gene
  KV238_RS02790 (KV238_02785) comGE 576455..576745 (-) 291 WP_230923802.1 competence type IV pilus minor pilin ComGE -
  KV238_RS02795 (KV238_02790) comGD 576702..577127 (-) 426 WP_042669821.1 competence type IV pilus minor pilin ComGD -
  KV238_RS02800 (KV238_02795) comGC/cglC 577105..577428 (-) 324 WP_115250221.1 competence type IV pilus major pilin ComGC Machinery gene
  KV238_RS02805 (KV238_02800) comYB 577429..578463 (-) 1035 WP_230923946.1 competence type IV pilus assembly protein ComGB Machinery gene
  KV238_RS02810 (KV238_02805) comGA/cglA 578396..579334 (-) 939 WP_230923803.1 competence type IV pilus ATPase ComGA Machinery gene
  KV238_RS02815 (KV238_02810) - 579515..580162 (-) 648 WP_230923804.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16185.72 Da        Isoelectric Point: 10.1988

>NTDB_id=586245 KV238_RS02785 WP_014622144.1 576034..576468(-) (comYF) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
MKDSRLKAFTLIECLIALLVISGSLLVYQALTKSLMVSERYLAANDQDNWLLFSQQLRAELSGTTLQGVSNNRLYVEKDK
KTLSFGQVKSHDFRKAAGNGRGYQPMLFGLSSSQITTVGQQVIIKLKWQSGLERTFIYAFQEKG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=586245 KV238_RS02785 WP_014622144.1 576034..576468(-) (comYF) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
TTGAAAGACAGTAGGCTAAAGGCTTTCACCTTGATAGAGTGCCTTATTGCCTTGCTTGTCATCTCAGGCTCTTTATTAGT
TTATCAGGCCTTAACCAAGAGCCTTATGGTGAGTGAGAGGTATCTAGCAGCAAATGATCAGGACAACTGGCTTTTATTTT
CCCAGCAATTGCGAGCAGAGCTTTCAGGTACTACCTTACAGGGTGTCTCCAATAATAGGCTATATGTTGAGAAAGACAAG
AAAACTCTGTCCTTTGGACAGGTCAAAAGCCATGATTTTAGAAAAGCAGCTGGCAATGGTCGAGGCTATCAGCCCATGCT
GTTTGGCTTGTCAAGTAGCCAAATAACAACGGTAGGTCAGCAGGTTATCATCAAGCTGAAATGGCAAAGCGGCTTAGAAA
GGACCTTTATTTATGCATTTCAAGAGAAGGGTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(41-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

52.083

100

0.521
  comYF Streptococcus mutans UA159

51.389

100

0.514
  comGF/cglF Streptococcus mitis SK321

50.365

95.139

0.479
  comGF/cglF Streptococcus mitis NCTC 12261

49.635

95.139

0.472
  comGF/cglF Streptococcus pneumoniae Rx1

48.175

95.139

0.458
  comGF/cglF Streptococcus pneumoniae D39

48.175

95.139

0.458
  comGF/cglF Streptococcus pneumoniae R6

48.175

95.139

0.458
  comGF/cglF Streptococcus pneumoniae TIGR4

48.175

95.139

0.458
  comGF Lactococcus lactis subsp. cremoris KW2

46.429

97.222

0.451