Detailed information NTG0586247

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: KV238_RS02805
• Genome accession: NZ_CP078012
• Coordinates: 577429..578463 (-)
• Length: 344 a.a.
• NCBI ID: WP_230923946.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain SEZ_18-036
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 572429..583463

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KV238_RS02765 (KV238_02760)	-	572434..573048 (+)	615	WP_021320266.1	hypothetical protein	-
KV238_RS02770 (KV238_02765)	-	573417..574619 (-)	1203	WP_126436211.1	acetate kinase	-
KV238_RS02775 (KV238_02770)	comYH	574679..575632 (-)	954	WP_165627046.1	class I SAM-dependent methyltransferase	Machinery gene
KV238_RS02780 (KV238_02775)	comGG	575694..576056 (-)	363	WP_012677238.1	competence type IV pilus minor pilin ComGG	-
KV238_RS02785 (KV238_02780)	comYF	576034..576468 (-)	435	WP_014622144.1	competence type IV pilus minor pilin ComGF	Machinery gene
KV238_RS02790 (KV238_02785)	comGE	576455..576745 (-)	291	WP_230923802.1	competence type IV pilus minor pilin ComGE	-
KV238_RS02795 (KV238_02790)	comGD	576702..577127 (-)	426	WP_042669821.1	competence type IV pilus minor pilin ComGD	-
KV238_RS02800 (KV238_02795)	comGC/cglC	577105..577428 (-)	324	WP_115250221.1	competence type IV pilus major pilin ComGC	Machinery gene
KV238_RS02805 (KV238_02800)	comYB	577429..578463 (-)	1035	WP_230923946.1	competence type IV pilus assembly protein ComGB	Machinery gene
KV238_RS02810 (KV238_02805)	comGA/cglA	578396..579334 (-)	939	WP_230923803.1	competence type IV pilus ATPase ComGA	Machinery gene
KV238_RS02815 (KV238_02810)	-	579515..580162 (-)	648	WP_230923804.1	ABC transporter ATP-binding protein	-
KV238_RS02820 (KV238_02815)	-	580164..582167 (-)	2004	Protein_522	DUF1430 domain-containing protein	-
KV238_RS02825 (KV238_02820)	-	582704..583069 (-)	366	WP_037580641.1	DUF1033 family protein	-

Sequence

Protein

• Length: 344 a.a.
• Molecular weight: 39524.77 Da
• Isoelectric Point: 9.3195

>NTDB_id=586247 KV238_RS02805 WP_230923946.1 577429..578463(-) (comYB) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
MISFLQRDISIPSRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLLPVYVTSMEASLLKGNGLADMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLVFLVVIMLGLRHYLIPQLESQNALTDLLL
HLPHYFLGFCLLLLLLIGSFYLYARSCSRLRLFSQLSYYPIIGSLLRQYLTAYYAREWGNLIGQGLELITILEMMSNEKS
QLMRELAKDIKQSLLAGQSFHQRVAAYPFFKKELSLMIEYGDIKSKLGQELDIYSQESWETFFSQLNRATQWIQPIIFLV
VAVVIVMIYAAILLPIYQHMGDVF

Nucleotide

• Length: 1035 bp

>NTDB_id=586247 KV238_RS02805 WP_230923946.1 577429..578463(-) (comYB) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
TTGATCAGCTTCTTGCAGAGGGACATCTCAATACCAAGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAGGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAACGGCTTTAATTTGACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TGCTACTGCCAGTCTATGTTACAAGTATGGAAGCAAGCCTATTAAAGGGCAACGGCCTTGCTGACATGCTAGCAGCCTTA
GGTTACTCTGATGCTGTTATGACACAAATTAATCTGGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGACTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACTTATCCGATCATACTTTTGGTTTTTT
TAGTGGTTATCATGCTAGGCTTGCGGCATTACCTAATCCCTCAGCTAGAGAGTCAAAATGCCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGTTTTTGTTTGCTTTTGCTGTTGCTAATTGGCTCTTTTTACCTATATGCCAGATCTTG
TAGTCGGCTAAGGCTATTTAGTCAGCTGAGCTATTATCCTATCATTGGGTCCTTATTGCGGCAATATTTGACAGCCTACT
ATGCTAGAGAATGGGGCAACCTCATCGGACAAGGCTTAGAATTAATCACCATTTTAGAGATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGAGTCTACTAGCTGGCCAATCCTTTCATCAAAGGGTTGCAGCTTA
TCCCTTTTTTAAAAAGGAGCTAAGCCTAATGATTGAATATGGTGACATCAAATCAAAGCTTGGTCAGGAATTAGATATCT
ATTCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTTAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTAGTG
GTTGCTGTGGTTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACATATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (215-335)

• Type II secretion system (T2SS), protein F (T2SSF) (29-147)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	54.572	98.547	0.538
comYB	Streptococcus mutans UA159	54.572	98.547	0.538
comYB	Streptococcus gordonii str. Challis substr. CH1	52.353	98.837	0.517
comGB/cglB	Streptococcus mitis NCTC 12261	48.512	97.674	0.474
comGB/cglB	Streptococcus mitis SK321	48.649	96.802	0.471
comGB/cglB	Streptococcus pneumoniae Rx1	47.748	96.802	0.462
comGB/cglB	Streptococcus pneumoniae D39	47.748	96.802	0.462
comGB/cglB	Streptococcus pneumoniae R6	47.748	96.802	0.462
comGB/cglB	Streptococcus pneumoniae TIGR4	47.748	96.802	0.462
comGB	Lactococcus lactis subsp. cremoris KW2	46.313	98.547	0.456