Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   TL13_RS00955 Genome accession   NC_021213
Coordinates   152656..153051 (+) Length   131 a.a.
NCBI ID   WP_015646304.1    Uniprot ID   A0A0Z8MGY0
Organism   Streptococcus suis TL13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 131334..155798 152656..153051 within 0


Gene organization within MGE regions


Location: 131334..155798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS00815 (TL13_0162) - 131334..132008 (-) 675 WP_015646277.1 head maturation protease, ClpP-related -
  TL13_RS00820 (TL13_0163) - 131998..132489 (-) 492 WP_015646278.1 hypothetical protein -
  TL13_RS00825 (TL13_0164) - 132502..133017 (-) 516 WP_041179361.1 hypothetical protein -
  TL13_RS10750 (TL13_0165) - 133165..133332 (-) 168 WP_015646280.1 hypothetical protein -
  TL13_RS00830 (TL13_0166) - 133376..133834 (-) 459 WP_015646281.1 hypothetical protein -
  TL13_RS00835 (TL13_0167) - 133838..134299 (-) 462 WP_015646282.1 hypothetical protein -
  TL13_RS00840 (TL13_0168) - 134296..135135 (-) 840 WP_015646283.1 ATP-binding protein -
  TL13_RS10055 (TL13_0169) - 135147..135998 (-) 852 WP_015646284.1 phage replisome organizer N-terminal domain-containing protein -
  TL13_RS00855 (TL13_0170) - 135988..136266 (-) 279 WP_015646285.1 hypothetical protein -
  TL13_RS00860 - 136259..136531 (-) 273 WP_330217389.1 hypothetical protein -
  TL13_RS10755 (TL13_0171) - 136614..136781 (-) 168 WP_015646286.1 hypothetical protein -
  TL13_RS00870 (TL13_0172) - 136995..137423 (-) 429 WP_015646287.1 hypothetical protein -
  TL13_RS00875 (TL13_0173) - 137857..138087 (-) 231 WP_015646288.1 hypothetical protein -
  TL13_RS00880 (TL13_0174) - 138100..138720 (-) 621 WP_015646289.1 Rha family transcriptional regulator -
  TL13_RS00885 (TL13_0175) - 138777..138983 (-) 207 WP_015646290.1 helix-turn-helix transcriptional regulator -
  TL13_RS10830 (TL13_0176) - 139129..139860 (+) 732 WP_015646291.1 helix-turn-helix domain-containing protein -
  TL13_RS00895 (TL13_0177) - 140478..141968 (+) 1491 WP_015646292.1 ATP-binding protein -
  TL13_RS00900 (TL13_0178) - 142284..143429 (+) 1146 WP_015646293.1 tyrosine-type recombinase/integrase -
  TL13_RS00905 (TL13_0179) comYH 143526..144479 (+) 954 WP_015646294.1 class I SAM-dependent methyltransferase Machinery gene
  TL13_RS00910 (TL13_0180) - 144529..145716 (+) 1188 WP_015646295.1 acetate kinase -
  TL13_RS00915 (TL13_0181) - 146029..146580 (+) 552 WP_015646296.1 folate family ECF transporter S component -
  TL13_RS00920 (TL13_0182) - 146636..147898 (+) 1263 WP_015646297.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  TL13_RS00925 (TL13_0183) pepA 148039..149100 (-) 1062 WP_015646298.1 glutamyl aminopeptidase -
  TL13_RS10570 - 149242..149346 (+) 105 WP_125175873.1 type I toxin-antitoxin system Fst family toxin -
  TL13_RS00930 (TL13_0184) - 149546..149830 (+) 285 WP_015646299.1 DUF4651 domain-containing protein -
  TL13_RS00935 (TL13_0185) - 149827..150147 (+) 321 WP_015646300.1 thioredoxin family protein -
  TL13_RS00940 (TL13_0186) - 150191..151147 (+) 957 WP_015646301.1 DUF1002 domain-containing protein -
  TL13_RS00945 (TL13_0187) ytpR 151166..151789 (+) 624 WP_015646302.1 YtpR family tRNA-binding protein -
  TL13_RS00950 (TL13_0188) - 151822..152601 (-) 780 WP_015646303.1 DUF2785 domain-containing protein -
  TL13_RS00955 (TL13_0189) ssbA 152656..153051 (+) 396 WP_015646304.1 single-stranded DNA-binding protein Machinery gene
  TL13_RS10760 (TL13_0190) - 153518..153685 (-) 168 WP_015646305.1 hypothetical protein -
  TL13_RS00960 (TL13_0191) groES 153883..154164 (+) 282 WP_015646306.1 co-chaperone GroES -
  TL13_RS00965 (TL13_0192) groL 154176..155798 (+) 1623 WP_014637331.1 chaperonin GroEL -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14837.68 Da        Isoelectric Point: 5.0026

>NTDB_id=58614 TL13_RS00955 WP_015646304.1 152656..153051(+) (ssbA) [Streptococcus suis TL13]
MYNKVIAIGRLTAQPELTQTPNGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=58614 TL13_RS00955 WP_015646304.1 152656..153051(+) (ssbA) [Streptococcus suis TL13]
ATGTATAATAAAGTTATTGCAATCGGTCGCTTGACGGCCCAACCCGAACTCACTCAAACCCCTAACGGCAAAAATCTGAC
CCGTGTAACAGTCGCAGTCAATCGCCGATTTAAGACTGAAAATGGTGAGCGTGAAGCAGATTTTCTTAATGTTATTTTCT
GGGGCAAACTGGCGGAAACACTTGTCTCCTATGGTAGCAAGGGTAGTCTGATTTCTATTGACGGTGAGTTGCGAACGCGA
AAATACGAAAAAGACGGCAGCAACCACTATGTGACTGAAATCTTAGGACAATCCTTCCAGTTGCTCGAAAGCCGTGCCCA
ACGTGCCATGCGTGAAAACAATACTGGTGATGACCTAGCTGACTTGGTTCTGGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8MGY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

76.336

100

0.763
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB/cilA Streptococcus pneumoniae Rx1

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae D39

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae TIGR4

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae R6

72.519

100

0.725
  ssbB/cilA Streptococcus mitis NCTC 12261

72.519

100

0.725
  ssbB/cilA Streptococcus mitis SK321

71.756

100

0.718
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.17

80.916

0.382

Multiple sequence alignment