Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   TL13_RS00905 Genome accession   NC_021213
Coordinates   143526..144479 (+) Length   317 a.a.
NCBI ID   WP_015646294.1    Uniprot ID   -
Organism   Streptococcus suis TL13     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 131334..155798 143526..144479 within 0


Gene organization within MGE regions


Location: 131334..155798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS00815 (TL13_0162) - 131334..132008 (-) 675 WP_015646277.1 head maturation protease, ClpP-related -
  TL13_RS00820 (TL13_0163) - 131998..132489 (-) 492 WP_015646278.1 hypothetical protein -
  TL13_RS00825 (TL13_0164) - 132502..133017 (-) 516 WP_041179361.1 hypothetical protein -
  TL13_RS10750 (TL13_0165) - 133165..133332 (-) 168 WP_015646280.1 hypothetical protein -
  TL13_RS00830 (TL13_0166) - 133376..133834 (-) 459 WP_015646281.1 hypothetical protein -
  TL13_RS00835 (TL13_0167) - 133838..134299 (-) 462 WP_015646282.1 hypothetical protein -
  TL13_RS00840 (TL13_0168) - 134296..135135 (-) 840 WP_015646283.1 ATP-binding protein -
  TL13_RS10055 (TL13_0169) - 135147..135998 (-) 852 WP_015646284.1 phage replisome organizer N-terminal domain-containing protein -
  TL13_RS00855 (TL13_0170) - 135988..136266 (-) 279 WP_015646285.1 hypothetical protein -
  TL13_RS00860 - 136259..136531 (-) 273 WP_330217389.1 hypothetical protein -
  TL13_RS10755 (TL13_0171) - 136614..136781 (-) 168 WP_015646286.1 hypothetical protein -
  TL13_RS00870 (TL13_0172) - 136995..137423 (-) 429 WP_015646287.1 hypothetical protein -
  TL13_RS00875 (TL13_0173) - 137857..138087 (-) 231 WP_015646288.1 hypothetical protein -
  TL13_RS00880 (TL13_0174) - 138100..138720 (-) 621 WP_015646289.1 Rha family transcriptional regulator -
  TL13_RS00885 (TL13_0175) - 138777..138983 (-) 207 WP_015646290.1 helix-turn-helix transcriptional regulator -
  TL13_RS10830 (TL13_0176) - 139129..139860 (+) 732 WP_015646291.1 helix-turn-helix domain-containing protein -
  TL13_RS00895 (TL13_0177) - 140478..141968 (+) 1491 WP_015646292.1 ATP-binding protein -
  TL13_RS00900 (TL13_0178) - 142284..143429 (+) 1146 WP_015646293.1 tyrosine-type recombinase/integrase -
  TL13_RS00905 (TL13_0179) comYH 143526..144479 (+) 954 WP_015646294.1 class I SAM-dependent methyltransferase Machinery gene
  TL13_RS00910 (TL13_0180) - 144529..145716 (+) 1188 WP_015646295.1 acetate kinase -
  TL13_RS00915 (TL13_0181) - 146029..146580 (+) 552 WP_015646296.1 folate family ECF transporter S component -
  TL13_RS00920 (TL13_0182) - 146636..147898 (+) 1263 WP_015646297.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  TL13_RS00925 (TL13_0183) pepA 148039..149100 (-) 1062 WP_015646298.1 glutamyl aminopeptidase -
  TL13_RS10570 - 149242..149346 (+) 105 WP_125175873.1 type I toxin-antitoxin system Fst family toxin -
  TL13_RS00930 (TL13_0184) - 149546..149830 (+) 285 WP_015646299.1 DUF4651 domain-containing protein -
  TL13_RS00935 (TL13_0185) - 149827..150147 (+) 321 WP_015646300.1 thioredoxin family protein -
  TL13_RS00940 (TL13_0186) - 150191..151147 (+) 957 WP_015646301.1 DUF1002 domain-containing protein -
  TL13_RS00945 (TL13_0187) ytpR 151166..151789 (+) 624 WP_015646302.1 YtpR family tRNA-binding protein -
  TL13_RS00950 (TL13_0188) - 151822..152601 (-) 780 WP_015646303.1 DUF2785 domain-containing protein -
  TL13_RS00955 (TL13_0189) ssbA 152656..153051 (+) 396 WP_015646304.1 single-stranded DNA-binding protein Machinery gene
  TL13_RS10760 (TL13_0190) - 153518..153685 (-) 168 WP_015646305.1 hypothetical protein -
  TL13_RS00960 (TL13_0191) groES 153883..154164 (+) 282 WP_015646306.1 co-chaperone GroES -
  TL13_RS00965 (TL13_0192) groL 154176..155798 (+) 1623 WP_014637331.1 chaperonin GroEL -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35588.67 Da        Isoelectric Point: 4.3462

>NTDB_id=58612 TL13_RS00905 WP_015646294.1 143526..144479(+) (comYH) [Streptococcus suis TL13]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVAGQHETDLVVNNNQTLKQLDLTKEEWRRAFQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVATSKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEMDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARPLAPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=58612 TL13_RS00905 WP_015646294.1 143526..144479(+) (comYH) [Streptococcus suis TL13]
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGCACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTGGTCAGCATGAGACAGATCTTGTTGTCAATAATAACC
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGCCGTGCCTTCCAATTCCTGCTCATCAAGGCCAATCAGACT
GAACCCATGCAGTATAACCACCAGTTCACACCAGACTCTATCGGATTTATCCTATCTTTTCTAGTAGACCAACTAGTAGC
TACTTCCAAGGTGACGGTTCTGGAAATTGGTTCGGGGACTGGGAACTTGGCGCAAACTATTCTCAACGCCAGCCAGAAAG
AATTAGATTATTTGGGGATCGAAGTGGATGACCTCTTGATTGATTTGTCAGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATCGG
CTACTATCCAGATGACCAGATTGCCAGCCGTTATCAGGTTGCCAGTCCAAATGAACATACCTACGCCCATCATTTACTCA
TGGAACAATCCCTCAAATATCTGGAAATGGATGGATTCGCTATTCTCTTGGCTCCAAATGATTTGTTGACTAGTCCGCAA
AGCGATTTACTGAAAGGCTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGACCGTTGGCGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

60.443

99.685

0.603
  comYH Streptococcus mutans UA159

60.127

99.685

0.599

Multiple sequence alignment