Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | CLOPA_RS06730 | Genome accession | NC_021182 |
| Coordinates | 1470957..1471292 (+) | Length | 111 a.a. |
| NCBI ID | WP_015614710.1 | Uniprot ID | R4K1E0 |
| Organism | Clostridium pasteurianum BC1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1465957..1476292
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CLOPA_RS06710 (Clopa_1408) | - | 1466784..1467404 (-) | 621 | WP_015614706.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CLOPA_RS06715 (Clopa_1409) | - | 1467905..1468618 (+) | 714 | WP_041711324.1 | nuclease-related domain-containing protein | - |
| CLOPA_RS06720 (Clopa_1410) | tsaD | 1468788..1469810 (+) | 1023 | WP_015614708.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| CLOPA_RS06725 (Clopa_1411) | - | 1469966..1470817 (+) | 852 | WP_015614709.1 | YitT family protein | - |
| CLOPA_RS06730 (Clopa_1412) | ssbA | 1470957..1471292 (+) | 336 | WP_015614710.1 | single-stranded DNA-binding protein | Machinery gene |
| CLOPA_RS06735 (Clopa_1413) | - | 1471454..1473263 (-) | 1810 | Protein_1358 | carbon starvation protein A | - |
| CLOPA_RS06740 (Clopa_1414) | - | 1473535..1475223 (+) | 1689 | WP_015614711.1 | LytS/YhcK type 5TM receptor domain-containing protein | - |
| CLOPA_RS06745 (Clopa_1415) | - | 1475216..1475986 (+) | 771 | WP_015614712.1 | LytTR family DNA-binding domain-containing protein | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12570.52 Da Isoelectric Point: 9.4684
>NTDB_id=58548 CLOPA_RS06730 WP_015614710.1 1470957..1471292(+) (ssbA) [Clostridium pasteurianum BC1]
MNKVLLVGRLVKDPELKHIESNGRELSNFTIAVNRNFVNAKGEREADFVPVVVWGKTAELVCNYMKKGRLISISGRLQIR
SYETKEGNKKYVTEVVGEEVLFLDSKKEDVG
MNKVLLVGRLVKDPELKHIESNGRELSNFTIAVNRNFVNAKGEREADFVPVVVWGKTAELVCNYMKKGRLISISGRLQIR
SYETKEGNKKYVTEVVGEEVLFLDSKKEDVG
Nucleotide
Download Length: 336 bp
>NTDB_id=58548 CLOPA_RS06730 WP_015614710.1 1470957..1471292(+) (ssbA) [Clostridium pasteurianum BC1]
GTGAATAAAGTTTTATTAGTAGGCAGATTAGTAAAGGATCCAGAATTAAAACACATTGAATCAAATGGTAGGGAACTAAG
TAATTTTACTATAGCAGTAAATAGAAATTTCGTAAACGCAAAGGGAGAAAGAGAAGCGGACTTTGTACCAGTAGTAGTTT
GGGGCAAAACCGCTGAATTGGTGTGCAACTACATGAAAAAGGGAAGACTTATTAGCATTAGCGGAAGGCTTCAAATAAGG
AGTTATGAGACAAAAGAAGGAAATAAAAAGTATGTAACAGAAGTGGTTGGTGAAGAAGTGTTATTCTTGGATTCTAAAAA
AGAAGATGTTGGCTAA
GTGAATAAAGTTTTATTAGTAGGCAGATTAGTAAAGGATCCAGAATTAAAACACATTGAATCAAATGGTAGGGAACTAAG
TAATTTTACTATAGCAGTAAATAGAAATTTCGTAAACGCAAAGGGAGAAAGAGAAGCGGACTTTGTACCAGTAGTAGTTT
GGGGCAAAACCGCTGAATTGGTGTGCAACTACATGAAAAAGGGAAGACTTATTAGCATTAGCGGAAGGCTTCAAATAAGG
AGTTATGAGACAAAAGAAGGAAATAAAAAGTATGTAACAGAAGTGGTTGGTGAAGAAGTGTTATTCTTGGATTCTAAAAA
AGAAGATGTTGGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52.83 |
95.495 |
0.505 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
50.459 |
98.198 |
0.495 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
48.113 |
95.495 |
0.459 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
46.729 |
96.396 |
0.45 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
46.729 |
96.396 |
0.45 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
45.794 |
96.396 |
0.441 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
45.794 |
96.396 |
0.441 |
| ssbB/cilA | Streptococcus mitis SK321 |
45.794 |
96.396 |
0.441 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
45.794 |
96.396 |
0.441 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
44.86 |
96.396 |
0.432 |
| ssbA | Streptococcus mutans UA159 |
44.86 |
96.396 |
0.432 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
45.283 |
95.495 |
0.432 |