Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   I6L84_RS07820 Genome accession   NZ_CP077224
Coordinates   1592007..1592945 (-) Length   312 a.a.
NCBI ID   WP_046164736.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1454     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1587007..1597945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L84_RS07780 (I6L84_07780) - 1587016..1588206 (-) 1191 WP_060553800.1 acetate kinase -
  I6L84_RS07785 (I6L84_07785) comYH 1588256..1589209 (-) 954 WP_060553799.1 class I SAM-dependent methyltransferase Machinery gene
  I6L84_RS07790 (I6L84_07790) comGG 1589240..1589671 (-) 432 WP_223358700.1 competence type IV pilus minor pilin ComGG -
  I6L84_RS07795 (I6L84_07795) comGF/cglF 1589652..1590089 (-) 438 WP_060553798.1 competence type IV pilus minor pilin ComGF Machinery gene
  I6L84_RS07800 (I6L84_07800) comGE/cglE 1590073..1590366 (-) 294 WP_060553797.1 competence type IV pilus minor pilin ComGE Machinery gene
  I6L84_RS07805 (I6L84_07805) comYD 1590338..1590766 (-) 429 WP_060553796.1 competence type IV pilus minor pilin ComGD Machinery gene
  I6L84_RS07810 (I6L84_07810) comYC 1590726..1591043 (-) 318 WP_045634162.1 competence type IV pilus major pilin ComGC Machinery gene
  I6L84_RS07815 (I6L84_07815) comYB 1591040..1592074 (-) 1035 WP_060553795.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6L84_RS07820 (I6L84_07820) comYA 1592007..1592945 (-) 939 WP_046164736.1 competence type IV pilus ATPase ComGA Machinery gene
  I6L84_RS07825 (I6L84_07825) - 1593058..1593417 (-) 360 WP_008810065.1 DUF1033 family protein -
  I6L84_RS07830 (I6L84_07830) rpoC 1593668..1597315 (-) 3648 WP_060553794.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35828.81 Da        Isoelectric Point: 5.4496

>NTDB_id=580043 I6L84_RS07820 WP_046164736.1 1592007..1592945(-) (comYA) [Streptococcus gordonii strain FDAARGOS 1454]
MVQKIAQAIVRQAKEECAQDIYFVPKDDCYELYMRIGDERRFIQTYDFDQLAAVISHFKFLAGMNVGEKRRSQLGSCDYR
YDDKETSIRLSTVGDYRGYESLVIRLLHDEETELKFWFTHFPEFREKFKDRGLYLFSGPVGSGKTTLMHQLAQLKFKGQQ
VMSIEDPVEIKQEDMLQLQLNETIGLTYESLIKLSLRHRPDLLIIGEIRDSETARAVVRASLTGATVFSTIHAKSIPGVY
ERLLELGVSEEELKIVLQGICYQRLIGGGGVIDFASNNYQEHEPTVWNQQIDQLLAAGHIHPEQAEAEKIRN

Nucleotide


Download         Length: 939 bp        

>NTDB_id=580043 I6L84_RS07820 WP_046164736.1 1592007..1592945(-) (comYA) [Streptococcus gordonii strain FDAARGOS 1454]
ATGGTTCAAAAAATTGCCCAGGCGATTGTCCGGCAGGCTAAGGAAGAGTGTGCTCAGGATATTTATTTTGTACCCAAGGA
TGATTGCTATGAACTTTATATGCGGATTGGTGATGAACGACGCTTCATACAGACTTATGATTTTGACCAATTAGCCGCTG
TGATTAGTCATTTTAAATTTTTAGCTGGGATGAATGTAGGAGAAAAACGTCGCAGTCAGCTGGGATCCTGTGATTATCGT
TATGATGATAAGGAAACATCAATTCGTCTGTCAACTGTAGGTGATTATCGTGGATATGAAAGTTTGGTTATTCGACTTTT
GCACGATGAAGAGACAGAATTGAAGTTTTGGTTTACTCATTTTCCTGAGTTTAGAGAGAAGTTTAAGGATCGAGGACTGT
ATCTTTTTTCGGGACCAGTAGGGAGTGGCAAGACCACTCTCATGCATCAATTAGCTCAGCTAAAATTTAAGGGTCAGCAG
GTTATGTCCATTGAGGATCCTGTTGAAATCAAGCAAGAGGATATGCTTCAGCTACAGCTGAATGAAACGATTGGTCTGAC
TTACGAAAGTCTGATTAAGCTTTCTCTGCGTCACCGTCCGGACTTGCTCATCATTGGAGAAATTCGGGATAGTGAAACTG
CTAGAGCTGTGGTTCGAGCTAGCTTGACGGGAGCTACAGTTTTTTCAACGATTCATGCTAAAAGCATTCCTGGTGTTTAC
GAGCGTTTGTTGGAGCTGGGTGTCAGCGAAGAGGAGCTAAAAATTGTTTTACAGGGTATTTGCTATCAGCGCTTGATTGG
GGGAGGAGGTGTGATAGACTTTGCCAGCAACAACTACCAAGAACACGAGCCGACCGTCTGGAATCAGCAGATTGATCAGC
TTCTTGCAGCAGGACATATCCATCCTGAGCAAGCAGAGGCAGAAAAAATTAGGAACTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus gordonii str. Challis substr. CH1

99.359

100

0.994
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

78.065

99.359

0.776
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

77.742

99.359

0.772
  comGA/cglA/cilD Streptococcus pneumoniae D39

77.742

99.359

0.772
  comGA/cglA/cilD Streptococcus pneumoniae R6

77.742

99.359

0.772
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

77.742

99.359

0.772
  comYA Streptococcus mutans UA159

67.093

100

0.673
  comYA Streptococcus mutans UA140

67.093

100

0.673
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

65.064

100

0.651
  comGA Lactococcus lactis subsp. cremoris KW2

54.808

100

0.548