Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   I6L84_RS07785 Genome accession   NZ_CP077224
Coordinates   1588256..1589209 (-) Length   317 a.a.
NCBI ID   WP_060553799.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1454     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1583256..1594209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L84_RS07765 (I6L84_07765) - 1583924..1585255 (-) 1332 WP_060553925.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  I6L84_RS07770 (I6L84_07770) folP 1585260..1586225 (-) 966 WP_060553802.1 dihydropteroate synthase -
  I6L84_RS07775 (I6L84_07775) - 1586302..1586967 (-) 666 WP_060553801.1 CPBP family intramembrane glutamic endopeptidase -
  I6L84_RS07780 (I6L84_07780) - 1587016..1588206 (-) 1191 WP_060553800.1 acetate kinase -
  I6L84_RS07785 (I6L84_07785) comYH 1588256..1589209 (-) 954 WP_060553799.1 class I SAM-dependent methyltransferase Machinery gene
  I6L84_RS07790 (I6L84_07790) comGG 1589240..1589671 (-) 432 WP_223358700.1 competence type IV pilus minor pilin ComGG -
  I6L84_RS07795 (I6L84_07795) comGF/cglF 1589652..1590089 (-) 438 WP_060553798.1 competence type IV pilus minor pilin ComGF Machinery gene
  I6L84_RS07800 (I6L84_07800) comGE/cglE 1590073..1590366 (-) 294 WP_060553797.1 competence type IV pilus minor pilin ComGE Machinery gene
  I6L84_RS07805 (I6L84_07805) comYD 1590338..1590766 (-) 429 WP_060553796.1 competence type IV pilus minor pilin ComGD Machinery gene
  I6L84_RS07810 (I6L84_07810) comYC 1590726..1591043 (-) 318 WP_045634162.1 competence type IV pilus major pilin ComGC Machinery gene
  I6L84_RS07815 (I6L84_07815) comYB 1591040..1592074 (-) 1035 WP_060553795.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6L84_RS07820 (I6L84_07820) comYA 1592007..1592945 (-) 939 WP_046164736.1 competence type IV pilus ATPase ComGA Machinery gene
  I6L84_RS07825 (I6L84_07825) - 1593058..1593417 (-) 360 WP_008810065.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 36014.13 Da        Isoelectric Point: 4.9691

>NTDB_id=580037 I6L84_RS07785 WP_060553799.1 1588256..1589209(-) (comYH) [Streptococcus gordonii strain FDAARGOS 1454]
MNFEKIEEAYTLLLENVQVIQNKLSTNFYDALIEQNGIYLDGQTDLEIVKKNHQTLKSLKLSREEWRRAYQFILMKASQT
EPLQANHQFTPDAIGFLLIFIIDQLMVASDITLLEMGSGTGNLAETILNNSRKEIDYLGLEIDDLLIDLSASIAEVMGSK
AHFAQGDAVRPQVLKESDLIISDLPVGYYPDDQIASRYQVASQTEHTYAHHLLMEQALKYLKVDGYAIFLAPNHLLTSPQ
SDLLKSWLKDNASLVAMIALPEKLFASASQAKTVFVLQKQKNIKAEPFAYALTDLQNHDEITRFRESFQKWRKVSEN

Nucleotide


Download         Length: 954 bp        

>NTDB_id=580037 I6L84_RS07785 WP_060553799.1 1588256..1589209(-) (comYH) [Streptococcus gordonii strain FDAARGOS 1454]
ATGAATTTTGAAAAAATCGAAGAAGCCTATACGCTCCTTTTAGAAAATGTCCAAGTCATTCAAAACAAGCTTTCAACTAA
TTTTTATGATGCCTTAATCGAGCAAAACGGTATCTATTTGGATGGACAAACGGACTTAGAAATCGTTAAAAAAAATCATC
AGACCTTGAAGAGCTTAAAGTTAAGCAGAGAAGAATGGCGCAGAGCCTATCAGTTCATTCTGATGAAGGCTTCTCAGACA
GAGCCTTTACAAGCCAATCATCAGTTTACACCAGATGCCATTGGTTTTCTGCTGATTTTCATCATTGACCAGCTGATGGT
AGCATCAGATATTACTCTTCTTGAGATGGGGAGCGGAACCGGAAATCTTGCAGAGACAATCCTGAATAATAGTCGGAAAG
AGATTGATTATCTAGGATTAGAGATTGATGATTTACTGATTGACCTATCTGCCAGTATTGCAGAAGTGATGGGATCAAAA
GCCCATTTTGCCCAGGGAGATGCTGTGCGCCCTCAAGTTCTAAAAGAGAGCGACTTGATTATTAGTGATCTGCCTGTCGG
TTACTATCCGGATGATCAGATTGCCAGTCGCTACCAGGTAGCCAGTCAGACGGAGCACACCTATGCTCATCATCTATTGA
TGGAGCAAGCTTTAAAGTATTTGAAGGTTGATGGTTATGCTATCTTCTTAGCTCCTAATCACCTCTTGACCAGCCCGCAG
AGCGACTTGCTTAAATCTTGGCTCAAAGACAATGCCAGCTTGGTTGCGATGATTGCTTTGCCAGAAAAACTCTTTGCATC
AGCCTCTCAGGCTAAGACGGTTTTTGTTTTGCAAAAACAAAAAAATATAAAAGCAGAACCTTTTGCCTATGCATTGACAG
ATCTACAAAATCATGATGAAATTACTCGCTTTCGCGAAAGTTTTCAAAAATGGCGCAAAGTTAGTGAAAACTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

58.786

98.738

0.58
  comYH Streptococcus mutans UA140

58.786

98.738

0.58