Detailed information NTG0580042

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: I6L84_RS07815
• Genome accession: NZ_CP077224
• Coordinates: 1591040..1592074 (-)
• Length: 344 a.a.
• NCBI ID: WP_060553795.1
• Uniprot ID: -
• Organism: Streptococcus gordonii strain FDAARGOS 1454
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1586040..1597074

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6L84_RS07775 (I6L84_07775)	-	1586302..1586967 (-)	666	WP_060553801.1	CPBP family intramembrane glutamic endopeptidase	-
I6L84_RS07780 (I6L84_07780)	-	1587016..1588206 (-)	1191	WP_060553800.1	acetate kinase	-
I6L84_RS07785 (I6L84_07785)	comYH	1588256..1589209 (-)	954	WP_060553799.1	class I SAM-dependent methyltransferase	Machinery gene
I6L84_RS07790 (I6L84_07790)	comGG	1589240..1589671 (-)	432	WP_223358700.1	competence type IV pilus minor pilin ComGG	-
I6L84_RS07795 (I6L84_07795)	comGF/cglF	1589652..1590089 (-)	438	WP_060553798.1	competence type IV pilus minor pilin ComGF	Machinery gene
I6L84_RS07800 (I6L84_07800)	comGE/cglE	1590073..1590366 (-)	294	WP_060553797.1	competence type IV pilus minor pilin ComGE	Machinery gene
I6L84_RS07805 (I6L84_07805)	comYD	1590338..1590766 (-)	429	WP_060553796.1	competence type IV pilus minor pilin ComGD	Machinery gene
I6L84_RS07810 (I6L84_07810)	comYC	1590726..1591043 (-)	318	WP_045634162.1	competence type IV pilus major pilin ComGC	Machinery gene
I6L84_RS07815 (I6L84_07815)	comYB	1591040..1592074 (-)	1035	WP_060553795.1	competence type IV pilus assembly protein ComGB	Machinery gene
I6L84_RS07820 (I6L84_07820)	comYA	1592007..1592945 (-)	939	WP_046164736.1	competence type IV pilus ATPase ComGA	Machinery gene
I6L84_RS07825 (I6L84_07825)	-	1593058..1593417 (-)	360	WP_008810065.1	DUF1033 family protein	-

Sequence

Protein

• Length: 344 a.a.
• Molecular weight: 39114.19 Da
• Isoelectric Point: 9.1979

>NTDB_id=580042 I6L84_RS07815 WP_060553795.1 1591040..1592074(-) (comYB) [Streptococcus gordonii strain FDAARGOS 1454]
MISFLQQDISILSKQRQKKLGTSKQKQVIELFNNLFSSGFHLAETVDFLGRSALLEQNYVQQMRRGLANGQAFSEIMTGL
GFSDAVVTQLSLAELHGNLSLALLKIEEYLDNLAKVKKKLIEVATYPMMLLGFLVLIMMGLRNYLLPQLSSQNFATQLIG
HLPTIFLLSVLMLLGLTGAIYLIFKGQKRIPVYSFLARLPFVGSFVKIYLTAYYAREWGNMIGQGLELSQIFQIMQEQRS
VLFQEIGQDLGQALQNGQEFSDKIASYPFFKKELSLIIEYGEVKSKLGSELEIYALKTWEEFFGRVNRTMNLIQPLVFVF
VALMIVLLYAAMLLPLYQNMEVHL

Nucleotide

• Length: 1035 bp

>NTDB_id=580042 I6L84_RS07815 WP_060553795.1 1591040..1592074(-) (comYB) [Streptococcus gordonii strain FDAARGOS 1454]
TTGATCAGCTTCTTGCAGCAGGACATATCCATCCTGAGCAAGCAGAGGCAGAAAAAATTAGGAACTAGCAAGCAAAAACA
GGTCATTGAACTGTTTAATAATTTATTCTCTAGTGGTTTTCATTTGGCTGAGACTGTGGATTTTTTAGGACGAAGTGCTC
TTTTGGAGCAGAACTATGTTCAGCAAATGCGTCGTGGCTTAGCTAATGGACAAGCATTTTCAGAGATTATGACTGGACTT
GGTTTTTCTGACGCGGTAGTAACCCAGCTGTCATTGGCTGAGCTACATGGGAATTTATCGCTTGCCTTGCTAAAAATAGA
GGAATATCTGGATAATCTTGCGAAGGTAAAAAAGAAGTTAATTGAAGTAGCGACCTATCCCATGATGCTTCTTGGCTTTT
TGGTATTGATTATGATGGGCTTGAGAAATTACCTATTACCCCAACTCAGCAGTCAAAATTTTGCAACTCAACTCATTGGT
CATTTGCCGACTATTTTTCTACTATCTGTCTTAATGTTACTTGGATTAACAGGAGCGATTTATCTGATTTTCAAAGGCCA
GAAACGGATCCCTGTATACTCTTTCTTAGCTCGCCTGCCTTTTGTTGGATCCTTTGTAAAGATTTACCTAACCGCCTATT
ATGCGCGTGAATGGGGCAATATGATTGGGCAAGGCTTGGAGCTCAGTCAGATTTTTCAGATTATGCAAGAGCAACGCTCG
GTTTTATTTCAGGAAATTGGTCAAGATTTAGGTCAAGCTTTACAAAACGGTCAAGAATTTTCAGATAAAATTGCTTCGTA
TCCTTTTTTCAAAAAGGAATTGTCTCTAATCATCGAATACGGGGAAGTCAAATCTAAGCTGGGAAGCGAACTAGAAATCT
ATGCTCTTAAGACTTGGGAAGAATTTTTTGGTAGGGTCAATCGGACCATGAATCTGATTCAGCCCCTAGTCTTTGTCTTT
GTAGCCTTGATGATTGTCTTATTGTATGCGGCAATGCTATTGCCCCTTTATCAAAATATGGAGGTTCATCTATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (215-335)

• Type II secretion system (T2SS), protein F (T2SSF) (30-147)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus gordonii str. Challis substr. CH1	97.384	100	0.974
comGB/cglB	Streptococcus mitis NCTC 12261	71.848	99.128	0.712
comGB/cglB	Streptococcus mitis SK321	71.726	97.674	0.701
comGB/cglB	Streptococcus pneumoniae TIGR4	70.833	97.674	0.692
comGB/cglB	Streptococcus pneumoniae R6	70.833	97.674	0.692
comGB/cglB	Streptococcus pneumoniae Rx1	70.833	97.674	0.692
comGB/cglB	Streptococcus pneumoniae D39	70.833	97.674	0.692
comYB	Streptococcus mutans UA140	59.475	99.709	0.593
comYB	Streptococcus mutans UA159	59.184	99.709	0.59
comGB	Lactococcus lactis subsp. cremoris KW2	50.742	97.965	0.497