Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   I6L84_RS07810 Genome accession   NZ_CP077224
Coordinates   1590726..1591043 (-) Length   105 a.a.
NCBI ID   WP_045634162.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1454     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1585726..1596043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L84_RS07775 (I6L84_07775) - 1586302..1586967 (-) 666 WP_060553801.1 CPBP family intramembrane glutamic endopeptidase -
  I6L84_RS07780 (I6L84_07780) - 1587016..1588206 (-) 1191 WP_060553800.1 acetate kinase -
  I6L84_RS07785 (I6L84_07785) comYH 1588256..1589209 (-) 954 WP_060553799.1 class I SAM-dependent methyltransferase Machinery gene
  I6L84_RS07790 (I6L84_07790) comGG 1589240..1589671 (-) 432 WP_223358700.1 competence type IV pilus minor pilin ComGG -
  I6L84_RS07795 (I6L84_07795) comGF/cglF 1589652..1590089 (-) 438 WP_060553798.1 competence type IV pilus minor pilin ComGF Machinery gene
  I6L84_RS07800 (I6L84_07800) comGE/cglE 1590073..1590366 (-) 294 WP_060553797.1 competence type IV pilus minor pilin ComGE Machinery gene
  I6L84_RS07805 (I6L84_07805) comYD 1590338..1590766 (-) 429 WP_060553796.1 competence type IV pilus minor pilin ComGD Machinery gene
  I6L84_RS07810 (I6L84_07810) comYC 1590726..1591043 (-) 318 WP_045634162.1 competence type IV pilus major pilin ComGC Machinery gene
  I6L84_RS07815 (I6L84_07815) comYB 1591040..1592074 (-) 1035 WP_060553795.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6L84_RS07820 (I6L84_07820) comYA 1592007..1592945 (-) 939 WP_046164736.1 competence type IV pilus ATPase ComGA Machinery gene
  I6L84_RS07825 (I6L84_07825) - 1593058..1593417 (-) 360 WP_008810065.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11447.31 Da        Isoelectric Point: 9.7153

>NTDB_id=580041 I6L84_RS07810 WP_045634162.1 1590726..1591043(-) (comYC) [Streptococcus gordonii strain FDAARGOS 1454]
MNKLKNLRVKAFTLVEMLVVLLIISVLMLLFVPNLTKQKEAVSDTGNAAVVKVVESQAELYELKNTGDQATLSKLVAAGN
ISQKQADSYKAYYGKNNSETQAVAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=580041 I6L84_RS07810 WP_045634162.1 1590726..1591043(-) (comYC) [Streptococcus gordonii strain FDAARGOS 1454]
ATGAACAAATTAAAAAATTTACGTGTGAAAGCTTTTACTCTGGTAGAAATGCTAGTCGTCCTTCTGATCATCAGTGTCCT
TATGCTCTTGTTTGTACCTAATCTAACCAAGCAAAAAGAGGCTGTTTCGGATACTGGAAATGCTGCGGTGGTTAAGGTAG
TTGAAAGCCAGGCTGAGCTCTATGAACTCAAAAATACAGGAGATCAAGCAACCCTTAGCAAACTAGTCGCAGCTGGGAAC
ATTAGTCAAAAGCAAGCAGACTCTTACAAGGCTTATTATGGTAAGAACAATAGTGAGACTCAGGCAGTTGCAAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

99.048

100

0.99
  comYC Streptococcus mutans UA140

71.429

100

0.714
  comYC Streptococcus mutans UA159

71.429

100

0.714
  comGC/cglC Streptococcus mitis NCTC 12261

68.571

100

0.686
  comGC/cglC Streptococcus mitis SK321

67.961

98.095

0.667
  comGC/cglC Streptococcus pneumoniae Rx1

66.99

98.095

0.657
  comGC/cglC Streptococcus pneumoniae D39

66.99

98.095

0.657
  comGC/cglC Streptococcus pneumoniae TIGR4

66.99

98.095

0.657
  comGC/cglC Streptococcus pneumoniae R6

66.99

98.095

0.657
  comGC Lactococcus lactis subsp. cremoris KW2

59.794

92.381

0.552
  comYC Streptococcus suis isolate S10

61.798

84.762

0.524