Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   I6L84_RS07690 Genome accession   NZ_CP077224
Coordinates   1569436..1569831 (+) Length   131 a.a.
NCBI ID   WP_046164720.1    Uniprot ID   A0A0F5MM81
Organism   Streptococcus gordonii strain FDAARGOS 1454     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1564436..1574831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L84_RS07665 (I6L84_07665) - 1565644..1566597 (-) 954 WP_223358715.1 sugar ABC transporter substrate-binding protein -
  I6L84_RS07670 (I6L84_07670) pepA 1566880..1567947 (-) 1068 WP_060553816.1 glutamyl aminopeptidase -
  I6L84_RS07675 (I6L84_07675) - 1568128..1568412 (+) 285 WP_060553815.1 DUF4651 domain-containing protein -
  I6L84_RS07680 (I6L84_07680) - 1568412..1568729 (+) 318 WP_060553814.1 thioredoxin family protein -
  I6L84_RS07685 (I6L84_07685) ytpR 1568746..1569372 (+) 627 WP_060553813.1 YtpR family tRNA-binding protein -
  I6L84_RS07690 (I6L84_07690) ssbB/cilA 1569436..1569831 (+) 396 WP_046164720.1 single-stranded DNA-binding protein Machinery gene
  I6L84_RS07695 (I6L84_07695) - 1570010..1571494 (+) 1485 WP_060553926.1 DUF1846 domain-containing protein -
  I6L84_RS07700 (I6L84_07700) - 1571547..1571981 (-) 435 WP_060553812.1 hypothetical protein -
  I6L84_RS07705 (I6L84_07705) - 1571991..1572155 (-) 165 WP_169791776.1 hypothetical protein -
  I6L84_RS07710 (I6L84_07710) - 1572152..1572355 (-) 204 WP_002901686.1 helix-turn-helix transcriptional regulator -
  I6L84_RS10690 - 1572461..1572529 (-) 69 Protein_1498 hypothetical protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14776.67 Da        Isoelectric Point: 6.2467

>NTDB_id=580035 I6L84_RS07690 WP_046164720.1 1569436..1569831(+) (ssbB/cilA) [Streptococcus gordonii strain FDAARGOS 1454]
MYNKVIIIGRLTATPELHKTSNEKSVTRATIAVNRRFKDQNGEREADFINIVLWGKLAETLASYASKGSLISLDGELRTR
RYEKDGVTHYVTEVLGHGFQLLESRAQRAIRENNSGADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=580035 I6L84_RS07690 WP_046164720.1 1569436..1569831(+) (ssbB/cilA) [Streptococcus gordonii strain FDAARGOS 1454]
ATGTACAATAAAGTCATTATTATCGGTCGTTTGACGGCCACACCAGAATTGCACAAAACTAGCAATGAAAAATCTGTCAC
ACGCGCAACAATTGCTGTTAACCGTCGTTTTAAGGATCAAAACGGTGAACGCGAAGCAGACTTTATCAATATTGTCCTTT
GGGGCAAATTGGCTGAGACTCTAGCTAGTTATGCCAGCAAAGGAAGCTTGATCTCTCTGGACGGCGAACTACGGACCCGT
CGTTATGAAAAAGACGGTGTGACTCACTATGTCACAGAAGTCCTTGGACATGGTTTCCAGCTTCTTGAAAGTCGTGCCCA
GCGGGCTATTCGTGAAAATAATTCTGGAGCCGATTTGGCTGACCTAGTCTTGGAAGAAGAGGAGCTTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5MM81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus mitis NCTC 12261

83.969

100

0.84
  ssbB/cilA Streptococcus pneumoniae Rx1

83.969

100

0.84
  ssbB/cilA Streptococcus pneumoniae D39

83.969

100

0.84
  ssbB/cilA Streptococcus pneumoniae R6

83.969

100

0.84
  ssbB/cilA Streptococcus pneumoniae TIGR4

83.969

100

0.84
  ssbB/cilA Streptococcus mitis SK321

83.206

100

0.832
  ssbA Streptococcus mutans UA159

81.679

100

0.817
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

50.943

80.916

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssbB Bacillus subtilis subsp. subtilis str. 168

45.37

82.443

0.374