Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   KP952_RS19130 Genome accession   NZ_CP076731
Coordinates   3610042..3610383 (-) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis subsp. subtilis strain Miz-8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3605042..3615383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP952_RS19115 (KP952_19115) hepAB 3605285..3608053 (+) 2769 WP_014481139.1 DEAD/DEAH box helicase -
  KP952_RS19120 (KP952_19120) ywpJ 3608179..3609036 (-) 858 WP_070547927.1 phosphatase YwpJ -
  KP952_RS19125 (KP952_19125) glcR 3609042..3609818 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  KP952_RS19130 (KP952_19130) ssbB 3610042..3610383 (-) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  KP952_RS19135 (KP952_19135) ywpG 3610460..3610843 (-) 384 WP_015714843.1 DynA interaction protein YwpG -
  KP952_RS19140 (KP952_19140) ywpF 3611018..3611428 (+) 411 WP_014481144.1 YwpF-like family protein -
  KP952_RS19145 (KP952_19145) - 3611568..3611960 (-) 393 Protein_3741 class A sortase -
  KP952_RS22275 - 3612022..3612174 (-) 153 Protein_3742 prealbumin-like fold domain-containing protein -
  KP952_RS19155 (KP952_19155) ywpD 3612208..3613043 (+) 836 Protein_3743 sensor histidine kinase -
  KP952_RS19160 (KP952_19160) mscL 3613091..3613486 (-) 396 WP_213783478.1 large conductance mechanosensitive channel protein MscL -
  KP952_RS19165 (KP952_19165) fabZ 3613559..3613984 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  KP952_RS19170 (KP952_19170) rapD 3614176..3615240 (+) 1065 WP_015251038.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=577791 KP952_RS19130 WP_003227798.1 3610042..3610383(-) (ssbB) [Bacillus subtilis subsp. subtilis strain Miz-8]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=577791 KP952_RS19130 WP_003227798.1 3610042..3610383(-) (ssbB) [Bacillus subtilis subsp. subtilis strain Miz-8]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389