Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KPL75_RS24740 Genome accession   NZ_CP076653
Coordinates   4748725..4749069 (+) Length   114 a.a.
NCBI ID   WP_016094152.1    Uniprot ID   R8DGK2
Organism   Bacillus sp. NP247     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 4749195..4750528 4748725..4749069 flank 126


Gene organization within MGE regions


Location: 4748725..4750528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPL75_RS24740 (KPL75_24730) ssbA 4748725..4749069 (+) 345 WP_016094152.1 single-stranded DNA-binding protein Machinery gene
  KPL75_RS24745 (KPL75_24735) - 4749195..4750528 (+) 1334 WP_258236975.1 IS3 family transposase -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 13158.11 Da        Isoelectric Point: 9.9521

>NTDB_id=577026 KPL75_RS24740 WP_016094152.1 4748725..4749069(+) (ssbA) [Bacillus sp. NP247]
MMNRVVLIGRLTKEPELYFTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRRSAENVTEYCTKGSLVGITGRIHTN
NYDDEKGKKIYRTEVVIESITFLERRREGASHKK

Nucleotide


Download         Length: 345 bp        

>NTDB_id=577026 KPL75_RS24740 WP_016094152.1 4748725..4749069(+) (ssbA) [Bacillus sp. NP247]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTTCACAAAACAAGGTGTCGCTTATGC
GCGAATATGTGTTGCGGTGAATAGAGGGTTTCGAAATAGTTTAGGTGAACAACAAGTGGATTTTATAAATTGTGTTGTTT
GGAGAAGGTCGGCTGAAAATGTAACGGAATATTGTACGAAGGGGTCACTTGTTGGGATTACAGGGCGTATTCATACGAAT
AATTATGATGATGAGAAAGGAAAGAAAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGAG
GGAGGGGGCATCGCATAAGAAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8DGK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.717

92.982

0.509
  ssbB Bacillus subtilis subsp. subtilis str. 168

48.214

98.246

0.474
  ssb Latilactobacillus sakei subsp. sakei 23K

50

92.982

0.465
  ssbB Lactococcus lactis subsp. cremoris KW2

44.762

92.105

0.412
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.727

96.491

0.412
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.818

96.491

0.404
  ssbA Streptococcus mutans UA159

40.909

96.491

0.395
  ssbB/cilA Streptococcus pneumoniae Rx1

40.909

96.491

0.395
  ssbB/cilA Streptococcus pneumoniae D39

40.909

96.491

0.395
  ssbB/cilA Streptococcus pneumoniae R6

40.909

96.491

0.395
  ssbB/cilA Streptococcus mitis SK321

40.909

96.491

0.395
  ssbB/cilA Streptococcus mitis NCTC 12261

40

96.491

0.386