Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   KMZ16_RS18670 Genome accession   NZ_CP076445
Coordinates   3616732..3617073 (-) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis subsp. subtilis strain ps4100     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3611732..3622073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ16_RS18655 (KMZ16_18500) hepAB 3611975..3614743 (+) 2769 WP_069703626.1 DEAD/DEAH box helicase -
  KMZ16_RS18660 (KMZ16_18505) ywpJ 3614869..3615726 (-) 858 WP_069703625.1 phosphatase YwpJ -
  KMZ16_RS18665 (KMZ16_18510) glcR 3615732..3616508 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  KMZ16_RS18670 (KMZ16_18515) ssbB 3616732..3617073 (-) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  KMZ16_RS18675 (KMZ16_18520) ywpG 3617150..3617533 (-) 384 WP_015714843.1 DynA interaction protein YwpG -
  KMZ16_RS18680 (KMZ16_18525) ywpF 3617708..3618118 (+) 411 WP_014481144.1 YwpF-like family protein -
  KMZ16_RS18685 (KMZ16_18530) - 3618258..3618650 (-) 393 Protein_3626 class A sortase -
  KMZ16_RS21375 - 3618712..3618864 (-) 153 Protein_3627 prealbumin-like fold domain-containing protein -
  KMZ16_RS18695 (KMZ16_18540) ywpD 3618898..3619733 (+) 836 Protein_3628 sensor histidine kinase -
  KMZ16_RS18700 (KMZ16_18545) mscL 3619781..3620176 (-) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  KMZ16_RS18705 (KMZ16_18550) fabZ 3620249..3620674 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  KMZ16_RS18710 (KMZ16_18555) rapD 3620866..3621930 (+) 1065 WP_029726041.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=575374 KMZ16_RS18670 WP_003227798.1 3616732..3617073(-) (ssbB) [Bacillus subtilis subsp. subtilis strain ps4100]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=575374 KMZ16_RS18670 WP_003227798.1 3616732..3617073(-) (ssbB) [Bacillus subtilis subsp. subtilis strain ps4100]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389